University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P77615
Original Database ID ref NP_415836.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation recname: full=uncharacterized
hth-type transcriptional regulator
ycjw;
Sequence Length 332

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region4-329
Protein Length332
Template PDB Code1jftA
Template Region3-325
Sequence Identity31%
E-Value0
GA3411
MPQS1.40963
z-DOPE-0.66
TSVMod MethodMTALL
TSVMod RMSD4.396
TSVMod NO350.726
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1jftpurine repressor mutant-hypoxanthine-purf operator complex ; PFAM: PF00356 PF00532 ; SCOP: 66652 66653
DBALI1jftA 
CATH1.10.260.40 Domain: 1jftA01 lambda repressor-like DNA-binding domains (100%)
CATH3.40.50.2300 Domain: 1jftA02 Rossmann fold (100%)
CATH3.40.50.2300 Domain: 1jftA03 Rossmann fold (90%)
JenaImageLibrary1jft 
Target Sequence
UniProtKBL3X258SubName: Full=Transcriptional regulator;
InterProL3X258 
PFAML3X258 
ProdomL3X258 
UniProtKBA0A080F832SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEN57624.1};
InterProA0A080F832 
PFAMA0A080F832 
ProdomA0A080F832 
UniProtKBA0A080GR82SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEN91179.1};
InterProA0A080GR82 
PFAMA0A080GR82 
ProdomA0A080GR82 
UniProtKBA0A0E1LYN1SubName: Full=LacI family putative transcriptional repressor {ECO:0000313|EMBL:AJF56193.1};
InterProA0A0E1LYN1 
PFAMA0A0E1LYN1 
ProdomA0A0E1LYN1 
UniProtKBA0A0E1SSF3SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:EDU62495.1};
InterProA0A0E1SSF3 
PFAMA0A0E1SSF3 
ProdomA0A0E1SSF3 
UniProtKBA0A0G3HP69SubName: Full=Putative DNA-binding transcriptional regulator protein {ECO:0000313|EMBL:AKK12927.1};
InterProA0A0G3HP69 
PFAMA0A0G3HP69 
ProdomA0A0G3HP69 
UniProtKBA0A0H3X4S1SubName: Full=DNA-binding transcriptional regulator {ECO:0000313|EMBL:AKM34880.1};
InterProA0A0H3X4S1 
PFAMA0A0H3X4S1 
ProdomA0A0H3X4S1 
UniProtKBG2F1I4SubName: Full=Putative DNA-binding transcriptional regulator;
InterProG2F1I4 
PFAMG2F1I4 
ProdomG2F1I4 
UniProtKBH4WA91SubName: Full=Putative LacI-type transcriptional regulator;EC=5.1.1.1;
InterProH4WA91 
PFAMH4WA91 
ProdomH4WA91 
UniProtKBH4VVG4SubName: Full=Bacterial regulatory s, lacI family protein;
InterProH4VVG4 
PFAMH4VVG4 
ProdomH4VVG4 
UniProtKBI0ZR62SubName: Full=Putative HTH-type transcriptional regulator ycjW;
InterProI0ZR62 
PFAMI0ZR62 
ProdomI0ZR62 
UniProtKBA0A079GQ45SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDY94369.1};
InterProA0A079GQ45 
PFAMA0A079GQ45 
ProdomA0A079GQ45 
UniProtKBA0A079FXI6SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDY66552.1};
InterProA0A079FXI6 
PFAMA0A079FXI6 
ProdomA0A079FXI6 
UniProtKBG0FDZ8SubName: Full=Uncharacterized HTH-type transcriptional regulator ycjW {ECO:0000313|EMBL:AEJ56329.1};
InterProG0FDZ8 
PFAMG0FDZ8 
ProdomG0FDZ8 
UniProtKBD8AY47SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFJ68267.1};
InterProD8AY47 
PFAMD8AY47 
ProdomD8AY47 
UniProtKBE1HRI6SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFK89470.1};
InterProE1HRI6 
PFAME1HRI6 
ProdomE1HRI6 
UniProtKBL4P4G5SubName: Full=Transcriptional regulator;
InterProL4P4G5 
PFAML4P4G5 
ProdomL4P4G5 
UniProtKBL4WRU4SubName: Full=Transcriptional regulator;
InterProL4WRU4 
PFAML4WRU4 
ProdomL4WRU4 
UniProtKBL4JSU4SubName: Full=Transcriptional regulator;
InterProL4JSU4 
PFAML4JSU4 
ProdomL4JSU4 
UniProtKBL8C079SubName: Full=Transcriptional regulator YcjW, LacI family,possibly involved in maltodextrin utilization pathway;
InterProL8C079 
PFAML8C079 
ProdomL8C079 
UniProtKBE9WS89SubName: Full=LacI family protein regulatory protein;
InterProE9WS89 
PFAME9WS89 
ProdomE9WS89 
UniProtKBM2PPC9SubName: Full=Putative DNA-binding transcriptional regulator;
InterProM2PPC9 
PFAMM2PPC9 
ProdomM2PPC9 
UniProtKBE9YA00SubName: Full=LacI family protein regulatory protein {ECO:0000313|EMBL:EGB68758.1};
InterProE9YA00 
PFAME9YA00 
ProdomE9YA00 
UniProtKBF4M5I6SubName: Full=Putative uncharacterized protein;
InterProF4M5I6 
PFAMF4M5I6 
ProdomF4M5I6 
UniProtKBH4VF51SubName: Full=Bacterial regulatory s, lacI family protein;
InterProH4VF51 
PFAMH4VF51 
ProdomH4VF51 
UniProtKBG2AU51SubName: Full=Putative uncharacterized protein;
InterProG2AU51 
PFAMG2AU51 
ProdomG2AU51 
UniProtKBA0A069XGB0SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDU26513.1};
InterProA0A069XGB0 
PFAMA0A069XGB0 
ProdomA0A069XGB0 
UniProtKBA0A069XL23SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDU30644.1};
InterProA0A069XL23 
PFAMA0A069XL23 
ProdomA0A069XL23 
UniProtKBA0A069Z0Y1SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDU52572.1};
InterProA0A069Z0Y1 
PFAMA0A069Z0Y1 
ProdomA0A069Z0Y1 
UniProtKBA0A070SNI2SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDX19552.1};
InterProA0A070SNI2 
PFAMA0A070SNI2 
ProdomA0A070SNI2 
UniProtKBA0A070UY45SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDX47257.1};
InterProA0A070UY45 
PFAMA0A070UY45 
ProdomA0A070UY45 
UniProtKBA0A070Y8S0SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDX87521.1};
InterProA0A070Y8S0 
PFAMA0A070Y8S0 
ProdomA0A070Y8S0 
UniProtKBA0A071AMH6SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDY62901.1};
InterProA0A071AMH6 
PFAMA0A071AMH6 
ProdomA0A071AMH6 
UniProtKBA0A071BUI3SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDY86489.1};
InterProA0A071BUI3 
PFAMA0A071BUI3 
ProdomA0A071BUI3 
UniProtKBA0A071CAJ5SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDZ15368.1};
InterProA0A071CAJ5 
PFAMA0A071CAJ5 
ProdomA0A071CAJ5 
UniProtKBA0A071DCU8SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDZ38878.1};
InterProA0A071DCU8 
PFAMA0A071DCU8 
ProdomA0A071DCU8 
UniProtKBA0A029MX65SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EZK01873.1};
InterProA0A029MX65 
PFAMA0A029MX65 
ProdomA0A029MX65 
UniProtKBA0A029KVV7SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EZJ77453.1};
InterProA0A029KVV7 
PFAMA0A029KVV7 
ProdomA0A029KVV7 
UniProtKBL3IAR7SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ELD71470.1};
InterProL3IAR7 
PFAML3IAR7 
ProdomL3IAR7 
UniProtKBI2YHQ3SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2YHQ3 
PFAMI2YHQ3 
ProdomI2YHQ3 
UniProtKBI2ZX79SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2ZX79 
PFAMI2ZX79 
ProdomI2ZX79 
UniProtKBI2XA82SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein {ECO:0000313|EMBL:EII45902.1};
InterProI2XA82 
PFAMI2XA82 
ProdomI2XA82 
UniProtKBK3I5X6SubName: Full=Putative LACI-type transcriptional regulator;
InterProK3I5X6 
PFAMK3I5X6 
ProdomK3I5X6 
UniProtKBK3HXF3SubName: Full=Putative LACI-type transcriptional regulator;
InterProK3HXF3 
PFAMK3HXF3 
ProdomK3HXF3 
UniProtKBK5GW07SubName: Full=Helix-turn-helix family protein;
InterProK5GW07 
PFAMK5GW07 
ProdomK5GW07 
UniProtKBK5GUB1SubName: Full=Putative LACI-type transcriptional regulator;
InterProK5GUB1 
PFAMK5GUB1 
ProdomK5GUB1 
UniProtKBB1ISU0SubName: Full=Transcriptional regulator, LacI family;EC=5.1.1.1;
InterProB1ISU0 
PFAMB1ISU0 
ProdomB1ISU0 
UniProtKBB1XCE8SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1XCE8 
PFAMB1XCE8 
ProdomB1XCE8 
UniProtKBL3HV04SubName: Full=Transcriptional regulator;
InterProL3HV04 
PFAML3HV04 
ProdomL3HV04 
UniProtKBA0A073GU88SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEJ69373.1};
InterProA0A073GU88 
PFAMA0A073GU88 
ProdomA0A073GU88 
UniProtKBD7ZNB0SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFK27613.1};
InterProD7ZNB0 
PFAMD7ZNB0 
ProdomD7ZNB0 
UniProtKBA0A073TCA3SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEL25161.1};
InterProA0A073TCA3 
PFAMA0A073TCA3 
ProdomA0A073TCA3 
UniProtKBL5GDG7SubName: Full=Transcriptional regulator;
InterProL5GDG7 
PFAML5GDG7 
ProdomL5GDG7 
UniProtKBA0A079D936SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDY18471.1};
InterProA0A079D936 
PFAMA0A079D936 
ProdomA0A079D936 
UniProtKBA0A080IBS9SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEO26132.1};
InterProA0A080IBS9 
PFAMA0A080IBS9 
ProdomA0A080IBS9 
UniProtKBH4UZQ6SubName: Full=Putative LacI-type transcriptional regulator {ECO:0000313|EMBL:EHV61158.1};EC=5.1.1.1 {ECO:0000313|EMBL:EHV61158.1};
InterProH4UZQ6 
PFAMH4UZQ6 
ProdomH4UZQ6 
UniProtKBI2P4K1SubName: Full=Uncharacterized protein;
InterProI2P4K1 
PFAMI2P4K1 
ProdomI2P4K1 
UniProtKBI4TUL4SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4TUL4 
PFAMI4TUL4 
ProdomI4TUL4 
UniProtKBA7ZZR2SubName: Full=Transcriptional regulator, LacI family;
InterProA7ZZR2 
PFAMA7ZZR2 
ProdomA7ZZR2 
UniProtKBL3KT79SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ELE01627.1};
InterProL3KT79 
PFAML3KT79 
ProdomL3KT79 
UniProtKBC4ZV68SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZV68 
PFAMC4ZV68 
ProdomC4ZV68 
UniProtKBC6UGW8SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC6UGW8 
PFAMC6UGW8 
ProdomC6UGW8 
UniProtKBL3ZYB4SubName: Full=Transcriptional regulator;
InterProL3ZYB4 
PFAML3ZYB4 
ProdomL3ZYB4 
UniProtKBL3UK98SubName: Full=Transcriptional regulator;
InterProL3UK98 
PFAML3UK98 
ProdomL3UK98 
UniProtKBA0A073W1M3SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEL86533.1};
InterProA0A073W1M3 
PFAMA0A073W1M3 
ProdomA0A073W1M3 
UniProtKBL3RLK2SubName: Full=Transcriptional regulator;
InterProL3RLK2 
PFAML3RLK2 
ProdomL3RLK2 
UniProtKBA0A074HZI9SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEN99892.1};
InterProA0A074HZI9 
PFAMA0A074HZI9 
ProdomA0A074HZI9 
UniProtKBI2Y2T1SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2Y2T1 
PFAMI2Y2T1 
ProdomI2Y2T1 
UniProtKBC6EFR2SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACT29324.1};
InterProC6EFR2 
PFAMC6EFR2 
ProdomC6EFR2 
UniProtKBE2WUN4SubName: Full=Uncharacterized HTH-type transcriptional regulator ycjW;
InterProE2WUN4 
PFAME2WUN4 
ProdomE2WUN4 
UniProtKBA0A074ILU1SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEO12883.1};
InterProA0A074ILU1 
PFAMA0A074ILU1 
ProdomA0A074ILU1 
UniProtKBH4UIJ4SubName: Full=Bacterial regulatory s, lacI family protein {ECO:0000313|EMBL:EHV59394.1};
InterProH4UIJ4 
PFAMH4UIJ4 
ProdomH4UIJ4 
UniProtKBI4TLH8SubName: Full=Putative DNA-binding transcriptional regulator;
InterProI4TLH8 
PFAMI4TLH8 
ProdomI4TLH8 
UniProtKBB2NCS0SubName: Full=Transcriptional regulator, LacI family;
InterProB2NCS0 
PFAMB2NCS0 
ProdomB2NCS0 
UniProtKBD7XYH3SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFJ99553.1};
InterProD7XYH3 
PFAMD7XYH3 
ProdomD7XYH3 
UniProtKBD8AMC9SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFK15701.1};
InterProD8AMC9 
PFAMD8AMC9 
ProdomD8AMC9 
UniProtKBL3QY44SubName: Full=Transcriptional regulator;
InterProL3QY44 
PFAML3QY44 
ProdomL3QY44 
UniProtKBI4J9U5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF86004.1};
InterProI4J9U5 
PFAMI4J9U5 
ProdomI4J9U5 
UniProtKBK5C175SubName: Full=Putative HTH-type transcriptional regulator ycjW {ECO:0000313|EMBL:EKJ81965.1};
InterProK5C175 
PFAMK5C175 
ProdomK5C175 
UniProtKBF4SHM7SubName: Full=Putative LACI-type transcriptional regulator {ECO:0000313|EMBL:EGI10905.1};
InterProF4SHM7 
PFAMF4SHM7 
ProdomF4SHM7 
UniProtKBL3EYR0SubName: Full=Transcriptional regulator;
InterProL3EYR0 
PFAML3EYR0 
ProdomL3EYR0 
UniProtKBB3XC46SubName: Full=Transcriptional regulator, LacI family;
InterProB3XC46 
PFAMB3XC46 
ProdomB3XC46 
UniProtKBL2V2G1SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ELC09721.1};
InterProL2V2G1 
PFAML2V2G1 
ProdomL2V2G1 
UniProtKBI2R3A7SubName: Full=Uncharacterized protein;
InterProI2R3A7 
PFAMI2R3A7 
ProdomI2R3A7 
UniProtKBC5W3V6SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACT29324.1};
InterProC5W3V6 
PFAMC5W3V6 
ProdomC5W3V6 
UniProtKBL3TUY6SubName: Full=Transcriptional regulator;
InterProL3TUY6 
PFAML3TUY6 
ProdomL3TUY6 
UniProtKBC9QX33SubName: Full=Putative DNA-binding transcriptional regulator;SubName: Full=Transcriptional regulator, LacI family;EC=5.1.1.1;
InterProC9QX33 
PFAMC9QX33 
ProdomC9QX33 
UniProtKBG1ZI62SubName: Full=Putative uncharacterized protein;
InterProG1ZI62 
PFAMG1ZI62 
ProdomG1ZI62 
UniProtKBH9USY2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFG40625.1};
InterProH9USY2 
PFAMH9USY2 
ProdomH9USY2 
UniProtKBH4X451SubName: Full=Putative LacI-type transcriptional regulator;EC=5.1.1.1;
InterProH4X451 
PFAMH4X451 
ProdomH4X451 
UniProtKBE3PL80SubName: Full=Predicted LacI family DNA-binding transcriptional regulator {ECO:0000313|EMBL:CBJ00927.1};
InterProE3PL80 
PFAME3PL80 
ProdomE3PL80 
UniProtKBE9WE07SubName: Full=LacI family protein Bacterial regulatory protein;
InterProE9WE07 
PFAME9WE07 
ProdomE9WE07 
UniProtKBE9XYI5SubName: Full=LacI family protein regulatory protein;
InterProE9XYI5 
PFAME9XYI5 
ProdomE9XYI5 
UniProtKBL4JBP3SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ELG90355.1};
InterProL4JBP3 
PFAML4JBP3 
ProdomL4JBP3 
UniProtKBA0A079FAK5SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KDY54089.1};
InterProA0A079FAK5 
PFAMA0A079FAK5 
ProdomA0A079FAK5 
UniProtKBA0A080ESP6SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:KEN49716.1};
InterProA0A080ESP6 
PFAMA0A080ESP6 
ProdomA0A080ESP6 
UniProtKBA0A0E0TYQ9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE56254.1};
InterProA0A0E0TYQ9 
PFAMA0A0E0TYQ9 
ProdomA0A0E0TYQ9 
UniProtKBA0A0E3MVN1SubName: Full=Putative HTH-type transcriptional regulator YcjW {ECO:0000313|EMBL:AKA90394.1};
InterProA0A0E3MVN1 
PFAMA0A0E3MVN1 
ProdomA0A0E3MVN1 
UniProtKBH0QCK9SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProH0QCK9 
PFAMH0QCK9 
ProdomH0QCK9 
UniProtKBL3VFZ0SubName: Full=Transcriptional regulator;
InterProL3VFZ0 
PFAML3VFZ0 
ProdomL3VFZ0