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Sequence Information

Primary Database Link P77746
Original Database ID sp P77746
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=uncharacterized
hth-type transcriptional regulator
ybdo;
Sequence Length 300

Dataset Information:

The newest dataset for this sequence was created on 2018-08-21. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region116-300
Protein Length300
Template PDB Code2y7pA
Template Region115-298
Sequence Identity16%
E-Value0
GA3411
MPQS0.860267
z-DOPE0.11
TSVMod MethodMSALL
TSVMod RMSD5.189
TSVMod NO350.616
DatasetMW-Noddd2
ModPipe VersionSVN.r1620
Model Date2018-08-21

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2y7p
DBALI2y7pA 
JenaImageLibrary2y7p 
Target Sequence
UniProtKBL3V3I0SubName: Full=Transcriptional regulator;
InterProL3V3I0 
PFAML3V3I0 
ProdomL3V3I0 
UniProtKBN2SYY4SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2SYY4 
PFAMN2SYY4 
ProdomN2SYY4 
UniProtKBN3L694SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN3L694 
PFAMN3L694 
ProdomN3L694 
UniProtKBS0V0D4SubName: Full=Transcriptional regulator YbdO;
InterProS0V0D4 
PFAMS0V0D4 
ProdomS0V0D4 
UniProtKBD8C453SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI86294.1};
InterProD8C453 
PFAMD8C453 
ProdomD8C453 
UniProtKBE0J1X0SubName: Full=LysR family transcriptional regulator {ECO:0000313|EMBL:AFH10323.1};SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:ADT74187.1};
InterProE0J1X0 
PFAME0J1X0 
ProdomE0J1X0 
UniProtKBS1HRI6SubName: Full=Transcriptional regulator YbdO {ECO:0000313|EMBL:EOW18052.1};
InterProS1HRI6 
PFAMS1HRI6 
ProdomS1HRI6 
UniProtKBE8Y704SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADX51844.1};
InterProE8Y704 
PFAME8Y704 
ProdomE8Y704 
UniProtKBS1KDQ5SubName: Full=Transcriptional regulator YbdO;
InterProS1KDQ5 
PFAMS1KDQ5 
ProdomS1KDQ5 
UniProtKBE9WBY0SubName: Full=LysR family bacterial regulatory helix-turn-helix protein;
InterProE9WBY0 
PFAME9WBY0 
ProdomE9WBY0 
UniProtKBN2NCI3SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2NCI3 
PFAMN2NCI3 
ProdomN2NCI3 
UniProtKBN2JKY7SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:ENA34613.1};
InterProN2JKY7 
PFAMN2JKY7 
ProdomN2JKY7 
UniProtKBM9J9C0SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM9J9C0 
PFAMM9J9C0 
ProdomM9J9C0 
UniProtKBL4JUB6SubName: Full=Transcriptional regulator;
InterProL4JUB6 
PFAML4JUB6 
ProdomL4JUB6 
UniProtKBL5GF10SubName: Full=Transcriptional regulator;
InterProL5GF10 
PFAML5GF10 
ProdomL5GF10 
UniProtKBM8SSG7SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8SSG7 
PFAMM8SSG7 
ProdomM8SSG7 
UniProtKBM8T4L6SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8T4L6 
PFAMM8T4L6 
ProdomM8T4L6 
UniProtKBM8U7P1SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EMV64830.1};
InterProM8U7P1 
PFAMM8U7P1 
ProdomM8U7P1 
UniProtKBM8U9F5SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8U9F5 
PFAMM8U9F5 
ProdomM8U9F5 
UniProtKBM8Y8F0SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8Y8F0 
PFAMM8Y8F0 
ProdomM8Y8F0 
UniProtKBM8YBI7SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8YBI7 
PFAMM8YBI7 
ProdomM8YBI7 
UniProtKBM9GUV2SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM9GUV2 
PFAMM9GUV2 
ProdomM9GUV2 
UniProtKBA0A069XPA2SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDU29377.1};
InterProA0A069XPA2 
PFAMA0A069XPA2 
ProdomA0A069XPA2 
UniProtKBA0A070Y4V1SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDX86161.1};
InterProA0A070Y4V1 
PFAMA0A070Y4V1 
ProdomA0A070Y4V1 
UniProtKBA0A073T999SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEL23280.1};
InterProA0A073T999 
PFAMA0A073T999 
ProdomA0A073T999 
UniProtKBT9N8T6SubName: Full=Transcriptional regulator;
InterProT9N8T6 
PFAMT9N8T6 
ProdomT9N8T6 
UniProtKBT9Q8E1SubName: Full=Transcriptional regulator;
InterProT9Q8E1 
PFAMT9Q8E1 
ProdomT9Q8E1 
UniProtKBV0A712SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ESA94834.1};
InterProV0A712 
PFAMV0A712 
ProdomV0A712 
UniProtKBV2R2R4SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ESK11918.1};
InterProV2R2R4 
PFAMV2R2R4 
ProdomV2R2R4 
UniProtKBW8TRF8SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:CEE08935.1};SubName: Full=LysR family transcriptional regulator {ECO:0000313|EMBL:KHI87960.1};SubName: Full=
InterProW8TRF8 
PFAMW8TRF8 
ProdomW8TRF8 
UniProtKBA7ZXN1SubName: Full=Transcriptional regulator, LysR family;
InterProA7ZXN1 
PFAMA7ZXN1 
ProdomA7ZXN1 
UniProtKBN3P4D5SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN3P4D5 
PFAMN3P4D5 
ProdomN3P4D5 
UniProtKBB1IYK2SubName: Full=Transcriptional regulator, LysR family;
InterProB1IYK2 
PFAMB1IYK2 
ProdomB1IYK2 
UniProtKBB1X601SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1X601 
PFAMB1X601 
ProdomB1X601 
UniProtKBT9MZ75SubName: Full=Transcriptional regulator;
InterProT9MZ75 
PFAMT9MZ75 
ProdomT9MZ75 
UniProtKBT9JWH0SubName: Full=Transcriptional regulator;
InterProT9JWH0 
PFAMT9JWH0 
ProdomT9JWH0 
UniProtKBT8Y0J8SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EQX59788.1};
InterProT8Y0J8 
PFAMT8Y0J8 
ProdomT8Y0J8 
UniProtKBA0A074HYX8SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEO01249.1};
InterProA0A074HYX8 
PFAMA0A074HYX8 
ProdomA0A074HYX8 
UniProtKBA0A080H108SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEN92162.1};
InterProA0A080H108 
PFAMA0A080H108 
ProdomA0A080H108 
UniProtKBA0A080IDP0SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEO28064.1};
InterProA0A080IDP0 
PFAMA0A080IDP0 
ProdomA0A080IDP0 
UniProtKBA0A0E3MUP7SubName: Full=Putative HTH-type transcriptional regulator YbdO {ECO:0000313|EMBL:AKA89560.1};
InterProA0A0E3MUP7 
PFAMA0A0E3MUP7 
ProdomA0A0E3MUP7 
UniProtKBA0A0G3HL58SubName: Full=Putative DNA-binding transcriptional regulator protein {ECO:0000313|EMBL:AKK13500.1};
InterProA0A0G3HL58 
PFAMA0A0G3HL58 
ProdomA0A0G3HL58 
UniProtKBA0A0H3X2Q7SubName: Full=DNA-binding transcriptional regulator {ECO:0000313|EMBL:AKM34180.1};
InterProA0A0H3X2Q7 
PFAMA0A0H3X2Q7 
ProdomA0A0H3X2Q7 
UniProtKBT7G4B4SubName: Full=Transcriptional regulator;
InterProT7G4B4 
PFAMT7G4B4 
ProdomT7G4B4 
UniProtKBT7JFD1SubName: Full=Transcriptional regulator;
InterProT7JFD1 
PFAMT7JFD1 
ProdomT7JFD1 
UniProtKBT8T0Y9SubName: Full=Transcriptional regulator;
InterProT8T0Y9 
PFAMT8T0Y9 
ProdomT8T0Y9 
UniProtKBB3IK67SubName: Full=Transcriptional regulator, LysR family;
InterProB3IK67 
PFAMB3IK67 
ProdomB3IK67 
UniProtKBL3F196SubName: Full=Transcriptional regulator;
InterProL3F196 
PFAML3F196 
ProdomL3F196 
UniProtKBS0VR64SubName: Full=Transcriptional regulator YbdO {ECO:0000313|EMBL:EOU70238.1};
InterProS0VR64 
PFAMS0VR64 
ProdomS0VR64 
UniProtKBM8VC92SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8VC92 
PFAMM8VC92 
ProdomM8VC92 
UniProtKBM9L637SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM9L637 
PFAMM9L637 
ProdomM9L637 
UniProtKBC9R1B6SubName: Full=Putative DNA-binding transcriptional regulator;SubName: Full=Transcriptional regulator, LysR family;
InterProC9R1B6 
PFAMC9R1B6 
ProdomC9R1B6 
UniProtKBE2WSD5SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProE2WSD5 
PFAME2WSD5 
ProdomE2WSD5 
UniProtKBE9WQ55SubName: Full=LysR family protein regulatory helix-turn-helix protein;
InterProE9WQ55 
PFAME9WQ55 
ProdomE9WQ55 
UniProtKBP77746RecName: Full=Uncharacterized HTH-type transcriptional regulator YbdO;
InterProP77746 
PFAMP77746 
ProdomP77746 
UniProtKBG2F5P6SubName: Full=LysR family transcriptional regulator;
InterProG2F5P6 
PFAMG2F5P6 
ProdomG2F5P6 
UniProtKBU0DDN8SubName: Full=Transcriptional regulator;
InterProU0DDN8 
PFAMU0DDN8 
ProdomU0DDN8 
UniProtKBI4TGQ4SubName: Full=Putative DNA-binding transcriptional regulator, LysR-type;
InterProI4TGQ4 
PFAMI4TGQ4 
ProdomI4TGQ4 
UniProtKBL8C3Y7SubName: Full=LysR-family transcriptional regulator YbeF;
InterProL8C3Y7 
PFAML8C3Y7 
ProdomL8C3Y7 
UniProtKBL2ZII1SubName: Full=Transcriptional regulator;
InterProL2ZII1 
PFAML2ZII1 
ProdomL2ZII1 
UniProtKBI2ZWR1SubName: Full=Transcriptional regulator, LysR family;
InterProI2ZWR1 
PFAMI2ZWR1 
ProdomI2ZWR1 
UniProtKBG2B6B3SubName: Full=Bacterial regulatory helix-turn-helix protein, lysR family protein;
InterProG2B6B3 
PFAMG2B6B3 
ProdomG2B6B3 
UniProtKBL3URB9SubName: Full=Transcriptional regulator;
InterProL3URB9 
PFAML3URB9 
ProdomL3URB9 
UniProtKBC4ZV50SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZV50 
PFAMC4ZV50 
ProdomC4ZV50 
UniProtKBI0ZP53SubName: Full=Transcriptional regulator, LysR family;
InterProI0ZP53 
PFAMI0ZP53 
ProdomI0ZP53 
UniProtKBL4A4A6SubName: Full=Transcriptional regulator;
InterProL4A4A6 
PFAML4A4A6 
ProdomL4A4A6 
UniProtKBM8UQJ0SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8UQJ0 
PFAMM8UQJ0 
ProdomM8UQJ0 
UniProtKBS0Y5D3SubName: Full=Transcriptional regulator YbdO;
InterProS0Y5D3 
PFAMS0Y5D3 
ProdomS0Y5D3 
UniProtKBT2N4C4SubName: Full=Uncharacterized protein;
InterProT2N4C4 
PFAMT2N4C4 
ProdomT2N4C4 
UniProtKBT9HU31SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EQY68285.1};
InterProT9HU31 
PFAMT9HU31 
ProdomT9HU31 
UniProtKBL3QZB1SubName: Full=Transcriptional regulator;
InterProL3QZB1 
PFAML3QZB1 
ProdomL3QZB1 
UniProtKBL4WZV6SubName: Full=Transcriptional regulator;
InterProL4WZV6 
PFAML4WZV6 
ProdomL4WZV6 
UniProtKBE9YE02SubName: Full=LysR family protein regulatory helix-turn-helix protein {ECO:0000313|EMBL:EGB67356.1};
InterProE9YE02 
PFAME9YE02 
ProdomE9YE02 
UniProtKBF9R3B8SubName: Full=LysR family transcriptional regulator;
InterProF9R3B8 
PFAMF9R3B8 
ProdomF9R3B8 
UniProtKBT8CY69SubName: Full=Transcriptional regulator;
InterProT8CY69 
PFAMT8CY69 
ProdomT8CY69 
UniProtKBT9DMN5SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:EQY32208.1};
InterProT9DMN5 
PFAMT9DMN5 
ProdomT9DMN5 
UniProtKBH0QBQ1SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProH0QBQ1 
PFAMH0QBQ1 
ProdomH0QBQ1 
UniProtKBH4X287SubName: Full=Bacterial regulatory helix-turn-helix, lysR family protein;
InterProH4X287 
PFAMH4X287 
ProdomH4X287 
UniProtKBU0CDU4SubName: Full=Transcriptional regulator;
InterProU0CDU4 
PFAMU0CDU4 
ProdomU0CDU4 
UniProtKBI2PSI0SubName: Full=Uncharacterized protein;
InterProI2PSI0 
PFAMI2PSI0 
ProdomI2PSI0 
UniProtKBT6NFI2SubName: Full=Transcriptional regulator;
InterProT6NFI2 
PFAMT6NFI2 
ProdomT6NFI2 
UniProtKBT2FUV4SubName: Full=LysR family transcripitonal regulator;
InterProT2FUV4 
PFAMT2FUV4 
ProdomT2FUV4 
UniProtKBS1L471SubName: Full=Transcriptional regulator YbdO;
InterProS1L471 
PFAMS1L471 
ProdomS1L471 
UniProtKBS1B2G4SubName: Full=Transcriptional regulator YbdO;
InterProS1B2G4 
PFAMS1B2G4 
ProdomS1B2G4 
UniProtKBM2PFZ2SubName: Full=LysR family transcriptional regulator;
InterProM2PFZ2 
PFAMM2PFZ2 
ProdomM2PFZ2 
UniProtKBM8TGI2SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8TGI2 
PFAMM8TGI2 
ProdomM8TGI2 
UniProtKBL2V8V1SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ELC11693.1};
InterProL2V8V1 
PFAML2V8V1 
ProdomL2V8V1 
UniProtKBM8VHP5SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM8VHP5 
PFAMM8VHP5 
ProdomM8VHP5 
UniProtKBM9CXB9SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM9CXB9 
PFAMM9CXB9 
ProdomM9CXB9 
UniProtKBN2E995SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2E995 
PFAMN2E995 
ProdomN2E995 
UniProtKBS1F6G8SubName: Full=Transcriptional regulator YbdO {ECO:0000313|EMBL:EOV82342.1};
InterProS1F6G8 
PFAMS1F6G8 
ProdomS1F6G8 
UniProtKBN2S553SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:ENB30574.1};
InterProN2S553 
PFAMN2S553 
ProdomN2S553 
UniProtKBD8BA75SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFJ64025.1};
InterProD8BA75 
PFAMD8BA75 
ProdomD8BA75 
UniProtKBB3IK67SubName: Full=Transcriptional regulator, LysR family;
InterProB3IK67 
PFAMB3IK67 
ProdomB3IK67 
UniProtKBB1X601SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1X601 
PFAMB1X601 
ProdomB1X601 
UniProtKBI2ZWR1SubName: Full=Transcriptional regulator, LysR family;
InterProI2ZWR1 
PFAMI2ZWR1 
ProdomI2ZWR1 
UniProtKBB1IYK2SubName: Full=Transcriptional regulator, LysR family;
InterProB1IYK2 
PFAMB1IYK2 
ProdomB1IYK2 
UniProtKBI2PSI0SubName: Full=Uncharacterized protein;
InterProI2PSI0 
PFAMI2PSI0 
ProdomI2PSI0 
UniProtKBA2UKQ8Transcriptional regulator, LysR family.
InterProA2UKQ8 
PFAMA2UKQ8 
ProdomA2UKQ8 
UniProtKBA7ZXN1SubName: Full=Transcriptional regulator, LysR family;
InterProA7ZXN1 
PFAMA7ZXN1 
ProdomA7ZXN1