University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P77748.1
Original Database ID ref NP_416202.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation ydij_ecoli recname: full=uncharacterized
protein ydij
Sequence Length 1018

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-542
Protein Length1018
Template PDB Code1wvfA
Template Region8-516
Sequence Identity17%
E-Value0
GA3411
MPQS0.531416
z-DOPE0.8
TSVMod MethodMSALL
TSVMod RMSD13.13
TSVMod NO350.405
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1wvfp-cresol methylhydroxylase: alteration of the structure of the flavoprotein subunit upon its binding to the cytochrome subunit
DBALI1wvfA 
CATH3.30.43.10 Domain: 1wvfA01 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 (99%)
CATH3.30.465.10 Domain: 1wvfA02 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 (100%)
CATH3.40.462.10 Domain: 1wvfA03 Vanillyl-alcohol Oxidase; Chain A, domain 3 (100%)
CATH1.10.45.10 Domain: 1wvfA04 Vanillyl-alcohol Oxidase; Chain A, domain 4 (90%)
JenaImageLibrary1wvf 
Target Sequence
UniProtKBI4JBC6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF86535.1};
InterProI4JBC6 
PFAMI4JBC6 
ProdomI4JBC6 
UniProtKBA0A079FSV3SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDY61067.1};
InterProA0A079FSV3 
PFAMA0A079FSV3 
ProdomA0A079FSV3 
UniProtKBA0A079HCX2SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDY99018.1};
InterProA0A079HCX2 
PFAMA0A079HCX2 
ProdomA0A079HCX2 
UniProtKBA0A080GSP6SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KEN90673.1};
InterProA0A080GSP6 
PFAMA0A080GSP6 
ProdomA0A080GSP6 
UniProtKBA0A0E3MYL5SubName: Full=Uncharacterized protein YdiJ {ECO:0000313|EMBL:AKA90704.1};
InterProA0A0E3MYL5 
PFAMA0A0E3MYL5 
ProdomA0A0E3MYL5 
UniProtKBA0A0G3HWQ5SubName: Full=Putative FAD-linked oxidoreductase protein {ECO:0000313|EMBL:AKK17764.1};
InterProA0A0G3HWQ5 
PFAMA0A0G3HWQ5 
ProdomA0A0G3HWQ5 
UniProtKBL4P0Z9SubName: Full=FAD-linked oxidoreductase;
InterProL4P0Z9 
PFAML4P0Z9 
ProdomL4P0Z9 
UniProtKBL4WIB2SubName: Full=FAD-linked oxidoreductase;
InterProL4WIB2 
PFAML4WIB2 
ProdomL4WIB2 
UniProtKBL8BYE4SubName: Full=Fe-S protein, homolog of lactate dehydrogenase SO1521;
InterProL8BYE4 
PFAML8BYE4 
ProdomL8BYE4 
UniProtKBM7VHJ6SubName: Full=Putative FAD-linked oxidoreductase;
InterProM7VHJ6 
PFAMM7VHJ6 
ProdomM7VHJ6 
UniProtKBM7VL44SubName: Full=Putative FAD-linked oxidoreductase;
InterProM7VL44 
PFAMM7VL44 
ProdomM7VL44 
UniProtKBA0A079FCH1SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDY54580.1};
InterProA0A079FCH1 
PFAMA0A079FCH1 
ProdomA0A079FCH1 
UniProtKBA0A074IEA9SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KEN98794.1};
InterProA0A074IEA9 
PFAMA0A074IEA9 
ProdomA0A074IEA9 
UniProtKBA0A073GSF4SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KEJ68708.1};
InterProA0A073GSF4 
PFAMA0A073GSF4 
ProdomA0A073GSF4 
UniProtKBT8YA70SubName: Full=FAD-linked oxidoreductase {ECO:0000313|EMBL:EQX52389.1};
InterProT8YA70 
PFAMT8YA70 
ProdomT8YA70 
UniProtKBK3HV61SubName: Full=Uncharacterized protein;
InterProK3HV61 
PFAMK3HV61 
ProdomK3HV61 
UniProtKBA0A069FBI6SubName: Full=FAD binding domain protein {ECO:0000313|EMBL:CEE09364.1};SubName: Full=FAD-linked oxidoreductase {ECO:0000313|EMBL:KLX04559.1};SubName: Full=Membrane protein {ECO:0000313|EMBL:KHG98834.1
InterProA0A069FBI6 
PFAMA0A069FBI6 
ProdomA0A069FBI6 
UniProtKBA0A069ZBM4SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDU54776.1};
InterProA0A069ZBM4 
PFAMA0A069ZBM4 
ProdomA0A069ZBM4 
UniProtKBA0A070SLQ1SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDX18230.1};
InterProA0A070SLQ1 
PFAMA0A070SLQ1 
ProdomA0A070SLQ1 
UniProtKBA0A070YI16SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDX86603.1};
InterProA0A070YI16 
PFAMA0A070YI16 
ProdomA0A070YI16 
UniProtKBA0A071ATZ7SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDY58890.1};
InterProA0A071ATZ7 
PFAMA0A071ATZ7 
ProdomA0A071ATZ7 
UniProtKBA0A071C2B0SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDY91579.1};
InterProA0A071C2B0 
PFAMA0A071C2B0 
ProdomA0A071C2B0 
UniProtKBA0A071CG75SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDZ18066.1};
InterProA0A071CG75 
PFAMA0A071CG75 
ProdomA0A071CG75 
UniProtKBA0A071DAQ0SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:KDZ38519.1};
InterProA0A071DAQ0 
PFAMA0A071DAQ0 
ProdomA0A071DAQ0 
UniProtKBN2H9I2SubName: Full=4Fe-4S dicluster domain protein;
InterProN2H9I2 
PFAMN2H9I2 
ProdomN2H9I2 
UniProtKBN2WYB2SubName: Full=4Fe-4S dicluster domain protein;
InterProN2WYB2 
PFAMN2WYB2 
ProdomN2WYB2 
UniProtKBB1XFZ5SubName: Full=Predicted FAD-linked oxidoreductase;
InterProB1XFZ5 
PFAMB1XFZ5 
ProdomB1XFZ5 
UniProtKBT7JV37SubName: Full=FAD-linked oxidoreductase;
InterProT7JV37 
PFAMT7JV37 
ProdomT7JV37 
UniProtKBC4ZYE9SubName: Full=Predicted FAD-linked oxidoreductase;
InterProC4ZYE9 
PFAMC4ZYE9 
ProdomC4ZYE9 
UniProtKBT8TE93SubName: Full=FAD-linked oxidoreductase;
InterProT8TE93 
PFAMT8TE93 
ProdomT8TE93 
UniProtKBC9QU20SubName: Full=FAD linked oxidase domain protein;SubName: Full=Putative FAD-linked oxidoreductase;
InterProC9QU20 
PFAMC9QU20 
ProdomC9QU20 
UniProtKBD8AUU8SubName: Full=FAD linked oxidase, C-terminal domain protein {ECO:0000313|EMBL:EFK13080.1};
InterProD8AUU8 
PFAMD8AUU8 
ProdomD8AUU8 
UniProtKBT9E494SubName: Full=FAD-linked oxidoreductase {ECO:0000313|EMBL:EQY24386.1};
InterProT9E494 
PFAMT9E494 
ProdomT9E494 
UniProtKBD8B8M6SubName: Full=FAD linked oxidase, C-terminal domain protein {ECO:0000313|EMBL:EFJ64561.1};
InterProD8B8M6 
PFAMD8B8M6 
ProdomD8B8M6 
UniProtKBT9NLW0SubName: Full=FAD-linked oxidoreductase;
InterProT9NLW0 
PFAMT9NLW0 
ProdomT9NLW0 
UniProtKBD8C1H7SubName: Full=FAD linked oxidase, C-terminal domain protein {ECO:0000313|EMBL:EFI87235.1};
InterProD8C1H7 
PFAMD8C1H7 
ProdomD8C1H7 
UniProtKBT2N563SubName: Full=Uncharacterized protein;
InterProT2N563 
PFAMT2N563 
ProdomT2N563 
UniProtKBL3QY29SubName: Full=FAD-linked oxidoreductase;
InterProL3QY29 
PFAML3QY29 
ProdomL3QY29 
UniProtKBL3VH29SubName: Full=FAD-linked oxidoreductase;
InterProL3VH29 
PFAML3VH29 
ProdomL3VH29 
UniProtKBN2Y9V3SubName: Full=4Fe-4S dicluster domain protein;
InterProN2Y9V3 
PFAMN2Y9V3 
ProdomN2Y9V3 
UniProtKBN3AFG8SubName: Full=4Fe-4S dicluster domain protein;
InterProN3AFG8 
PFAMN3AFG8 
ProdomN3AFG8 
UniProtKBN4IHF2SubName: Full=4Fe-4S dicluster domain protein;
InterProN4IHF2 
PFAMN4IHF2 
ProdomN4IHF2 
UniProtKBP77748RecName: Full=Uncharacterized protein YdiJ;
InterProP77748 
PFAMP77748 
ProdomP77748 
UniProtKBS0Z7F0SubName: Full=FAD-linked oxidoreductase;
InterProS0Z7F0 
PFAMS0Z7F0 
ProdomS0Z7F0 
UniProtKBS1ADE4SubName: Full=FAD-linked oxidoreductase;
InterProS1ADE4 
PFAMS1ADE4 
ProdomS1ADE4 
UniProtKBS1I584SubName: Full=FAD-linked oxidoreductase {ECO:0000313|EMBL:EOW15039.1};
InterProS1I584 
PFAMS1I584 
ProdomS1I584 
UniProtKBE1HTE4SubName: Full=FAD linked oxidase, C-terminal domain protein {ECO:0000313|EMBL:EFK88817.1};
InterProE1HTE4 
PFAME1HTE4 
ProdomE1HTE4 
UniProtKBN4F1V3SubName: Full=4Fe-4S dicluster domain protein;
InterProN4F1V3 
PFAMN4F1V3 
ProdomN4F1V3 
UniProtKBE3PMR2SubName: Full=Putative FAD-binding oxidase {ECO:0000313|EMBL:CBJ01224.1};
InterProE3PMR2 
PFAME3PMR2 
ProdomE3PMR2 
UniProtKBU0C8L2SubName: Full=FAD-linked oxidoreductase;
InterProU0C8L2 
PFAMU0C8L2 
ProdomU0C8L2 
UniProtKBU0E492SubName: Full=FAD-linked oxidoreductase;
InterProU0E492 
PFAMU0E492 
ProdomU0E492 
UniProtKBG2EYI4SubName: Full=Putative FAD-linked oxidoreductase;
InterProG2EYI4 
PFAMG2EYI4 
ProdomG2EYI4 
UniProtKBK5HRM4SubName: Full=Uncharacterized protein;
InterProK5HRM4 
PFAMK5HRM4 
ProdomK5HRM4 
UniProtKBL3ZWZ0SubName: Full=FAD-linked oxidoreductase;
InterProL3ZWZ0 
PFAML3ZWZ0 
ProdomL3ZWZ0 
UniProtKBE9WXL4SubName: Full=FAD linked oxidase domain-containing protein;
InterProE9WXL4 
PFAME9WXL4 
ProdomE9WXL4 
UniProtKBF9QUV1SubName: Full=Putative FAD-linked oxidoreductase;
InterProF9QUV1 
PFAMF9QUV1 
ProdomF9QUV1 
UniProtKBL3RJG1SubName: Full=FAD-linked oxidoreductase;
InterProL3RJG1 
PFAML3RJG1 
ProdomL3RJG1 
UniProtKBS1EHT3SubName: Full=FAD-linked oxidoreductase;
InterProS1EHT3 
PFAMS1EHT3 
ProdomS1EHT3 
UniProtKBS1CXG3SubName: Full=FAD-linked oxidoreductase;
InterProS1CXG3 
PFAMS1CXG3 
ProdomS1CXG3 
UniProtKBT7ZBY7SubName: Full=FAD-linked oxidoreductase;
InterProT7ZBY7 
PFAMT7ZBY7 
ProdomT7ZBY7 
UniProtKBH4X6A1SubName: Full=FAD linked oxidase domain protein;
InterProH4X6A1 
PFAMH4X6A1 
ProdomH4X6A1 
UniProtKBI2P784SubName: Full=Uncharacterized protein;
InterProI2P784 
PFAMI2P784 
ProdomI2P784 
UniProtKBK3LM53SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EKI53324.1};
InterProK3LM53 
PFAMK3LM53 
ProdomK3LM53 
UniProtKBI2ZNV6SubName: Full=FAD linked oxidase, C-terminal domain protein;
InterProI2ZNV6 
PFAMI2ZNV6 
ProdomI2ZNV6 
UniProtKBU0BR81SubName: Full=FAD-linked oxidoreductase;
InterProU0BR81 
PFAMU0BR81 
ProdomU0BR81 
UniProtKBH4UJI5SubName: Full=FAD linked oxidase domain protein {ECO:0000313|EMBL:EHV59735.1};
InterProH4UJI5 
PFAMH4UJI5 
ProdomH4UJI5 
UniProtKBT9MLE9SubName: Full=FAD-linked oxidoreductase;
InterProT9MLE9 
PFAMT9MLE9 
ProdomT9MLE9 
UniProtKBE6B054SubName: Full=Uncharacterized protein ydiJ {ECO:0000313|EMBL:EFU99465.1};
InterProE6B054 
PFAME6B054 
ProdomE6B054 
UniProtKBS1PXX6SubName: Full=FAD-linked oxidoreductase;
InterProS1PXX6 
PFAMS1PXX6 
ProdomS1PXX6 
UniProtKBI2I8S4SubName: Full=Putative FAD-linked oxidoreductase;
InterProI2I8S4 
PFAMI2I8S4 
ProdomI2I8S4 
UniProtKBK3I3G9SubName: Full=Uncharacterized protein;
InterProK3I3G9 
PFAMK3I3G9 
ProdomK3I3G9 
UniProtKBL3WY98SubName: Full=FAD-linked oxidoreductase;
InterProL3WY98 
PFAML3WY98 
ProdomL3WY98 
UniProtKBN2FT00SubName: Full=4Fe-4S dicluster domain protein;
InterProN2FT00 
PFAMN2FT00 
ProdomN2FT00 
UniProtKBS1LW25SubName: Full=FAD-linked oxidoreductase;
InterProS1LW25 
PFAMS1LW25 
ProdomS1LW25 
UniProtKBH4VWE8SubName: Full=FAD linked oxidase domain protein;
InterProH4VWE8 
PFAMH4VWE8 
ProdomH4VWE8 
UniProtKBV0ZVU2SubName: Full=FAD linked oxidase protein {ECO:0000313|EMBL:ESD98667.1};
InterProV0ZVU2 
PFAMV0ZVU2 
ProdomV0ZVU2 
UniProtKBI2YMR3SubName: Full=FAD linked oxidase, C-terminal domain protein;
InterProI2YMR3 
PFAMI2YMR3 
ProdomI2YMR3 
UniProtKBH0QAA6SubName: Full=Predicted FAD-linked oxidoreductase;
InterProH0QAA6 
PFAMH0QAA6 
ProdomH0QAA6 
UniProtKBS1K703SubName: Full=FAD-linked oxidoreductase;
InterProS1K703 
PFAMS1K703 
ProdomS1K703 
UniProtKBH4V124SubName: Full=FAD linked oxidase domain protein {ECO:0000313|EMBL:EHV58937.1};
InterProH4V124 
PFAMH4V124 
ProdomH4V124 
UniProtKBH4VGF9SubName: Full=FAD linked oxidase domain protein;
InterProH4VGF9 
PFAMH4VGF9 
ProdomH4VGF9 
UniProtKBH4WCS5SubName: Full=FAD linked oxidase domain protein;
InterProH4WCS5 
PFAMH4WCS5 
ProdomH4WCS5 
UniProtKBS1KU37SubName: Full=FAD-linked oxidoreductase;
InterProS1KU37 
PFAMS1KU37 
ProdomS1KU37 
UniProtKBN3Q670SubName: Full=4Fe-4S dicluster domain protein;
InterProN3Q670 
PFAMN3Q670 
ProdomN3Q670 
UniProtKBI0ZT62SubName: Full=FAD linked oxidase protein;
InterProI0ZT62 
PFAMI0ZT62 
ProdomI0ZT62 
UniProtKBT9V477SubName: Full=FAD-linked oxidoreductase;
InterProT9V477 
PFAMT9V477 
ProdomT9V477 
UniProtKBI2Y9S4SubName: Full=FAD linked oxidase, C-terminal domain protein;
InterProI2Y9S4 
PFAMI2Y9S4 
ProdomI2Y9S4 
UniProtKBN4E8G0SubName: Full=4Fe-4S dicluster domain protein;
InterProN4E8G0 
PFAMN4E8G0 
ProdomN4E8G0 
UniProtKBG2B9T8SubName: Full=Putative uncharacterized protein;
InterProG2B9T8 
PFAMG2B9T8 
ProdomG2B9T8 
UniProtKBG2AV50SubName: Full=Putative uncharacterized protein;
InterProG2AV50 
PFAMG2AV50 
ProdomG2AV50 
UniProtKBI4TCW7SubName: Full=Putative FAD-linked oxidoreductase;
InterProI4TCW7 
PFAMI4TCW7 
ProdomI4TCW7 
UniProtKBK5CTK4SubName: Full=FAD linked oxidase protein {ECO:0000313|EMBL:EKJ84448.1};
InterProK5CTK4 
PFAMK5CTK4 
ProdomK5CTK4 
UniProtKBK5GT47SubName: Full=4Fe-4S dicluster domain protein;
InterProK5GT47 
PFAMK5GT47 
ProdomK5GT47 
UniProtKBL2ZA76SubName: Full=FAD-linked oxidoreductase;
InterProL2ZA76 
PFAML2ZA76 
ProdomL2ZA76 
UniProtKBL3KNN0SubName: Full=FAD-linked oxidoreductase {ECO:0000313|EMBL:ELE00495.1};
InterProL3KNN0 
PFAML3KNN0 
ProdomL3KNN0 
UniProtKBE9WF37SubName: Full=FAD linked oxidase domain-containing protein;
InterProE9WF37 
PFAME9WF37 
ProdomE9WF37 
UniProtKBL3TRJ6SubName: Full=FAD-linked oxidoreductase;
InterProL3TRJ6 
PFAML3TRJ6 
ProdomL3TRJ6 
UniProtKBM2PM14SubName: Full=Putative FAD-linked oxidoreductase;
InterProM2PM14 
PFAMM2PM14 
ProdomM2PM14 
UniProtKBF4SK29SubName: Full=Putative oxidase {ECO:0000313|EMBL:EGI11303.1};
InterProF4SK29 
PFAMF4SK29 
ProdomF4SK29 
UniProtKBM9H5N1SubName: Full=4Fe-4S dicluster domain protein {ECO:0000313|EMBL:EMX30381.1};
InterProM9H5N1 
PFAMM9H5N1 
ProdomM9H5N1