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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link Q46863
Original Database ID ref NP_417492.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=probable deoxycholate-binding
periplasmic protein ygis;flags:
prec ursor;
Sequence Length 535

Dataset Information:

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Model Information

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Target Region21-535
Protein Length535
Template PDB Code1jetA
Template Region1-517
Sequence Identity46%
E-Value0
GA3411
MPQS1.62762
z-DOPE-1.13
TSVMod MethodMSALL
TSVMod RMSD2.394
TSVMod NO350.91
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

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Template Structure
PDB1jetoligo-peptide binding protein (oppa) complexed with kak ; PFAM: PF00496 ; SCOP: 35718
DBALI1jetA 
CATH3.40.190.10 Domain: 1jetA01 Periplasmic binding protein-like II (100%)
CATH3.90.76.10 Domain: 1jetA02 Dipeptide-binding Protein; Domain 1 (100%)
CATH3.10.105.10 Domain: 1jetA03 Dipeptide-binding Protein; Domain 3 (100%)
JenaImageLibrary1jet 
Target Sequence
UniProtKBL3R8Z9SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3R8Z9 
PFAML3R8Z9 
ProdomL3R8Z9 
UniProtKBA0A0E1T5B0SubName: Full=Bacterial extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:EDU66549.1};
InterProA0A0E1T5B0 
PFAMA0A0E1T5B0 
ProdomA0A0E1T5B0 
UniProtKBA0A0G3I1G4SubName: Full=Putative transporter subunit: periplasmic-binding component of ABC superfamily protein {ECO:0000313|EMBL:AKK18815.1};
InterProA0A0G3I1G4 
PFAMA0A0G3I1G4 
ProdomA0A0G3I1G4 
UniProtKBG0F5L6SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:AEJ58408.1};
InterProG0F5L6 
PFAMG0F5L6 
ProdomG0F5L6 
UniProtKBF9R301SubName: Full=Putative ABC transporter periplasmic-binding protein;
InterProF9R301 
PFAMF9R301 
ProdomF9R301 
UniProtKBG4PPD1SubName: Full=Putative transporter subunit: periplasmic-binding component of ABC superfamily;
InterProG4PPD1 
PFAMG4PPD1 
ProdomG4PPD1 
UniProtKBG2CQ98SubName: Full=Putative binding protein ygiS;
InterProG2CQ98 
PFAMG2CQ98 
ProdomG2CQ98 
UniProtKBG2BDR0SubName: Full=Putative binding protein ygiS;
InterProG2BDR0 
PFAMG2BDR0 
ProdomG2BDR0 
UniProtKBH4WFD1SubName: Full=Periplasmic oligopeptide-binding protein;
InterProH4WFD1 
PFAMH4WFD1 
ProdomH4WFD1 
UniProtKBH4W1D2SubName: Full=Putative binding protein ygiS;
InterProH4W1D2 
PFAMH4W1D2 
ProdomH4W1D2 
UniProtKBI0ZVI5SubName: Full=Putative binding protein ygiS;
InterProI0ZVI5 
PFAMI0ZVI5 
ProdomI0ZVI5 
UniProtKBA0A0E0V9M1SubName: Full=Putative transporter subunit: periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:AEQ14272.1};
InterProA0A0E0V9M1 
PFAMA0A0E0V9M1 
ProdomA0A0E0V9M1 
UniProtKBA0A0E0U3F9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE58311.1};
InterProA0A0E0U3F9 
PFAMA0A0E0U3F9 
ProdomA0A0E0U3F9 
UniProtKBF4M026SubName: Full=Putative uncharacterized protein;
InterProF4M026 
PFAMF4M026 
ProdomF4M026 
UniProtKBD7XZL8SubName: Full=ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFJ99152.1};
InterProD7XZL8 
PFAMD7XZL8 
ProdomD7XZL8 
UniProtKBD8ATH9SubName: Full=ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFK13562.1};
InterProD8ATH9 
PFAMD8ATH9 
ProdomD8ATH9 
UniProtKBL3S5U1SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3S5U1 
PFAML3S5U1 
ProdomL3S5U1 
UniProtKBL3TKI0SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3TKI0 
PFAML3TKI0 
ProdomL3TKI0 
UniProtKBE2WYE7SubName: Full=Putative binding protein ygiS;
InterProE2WYE7 
PFAME2WYE7 
ProdomE2WYE7 
UniProtKBE3PJE0SubName: Full=Predicted transporter subunit: periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CBJ02791.1};
InterProE3PJE0 
PFAME3PJE0 
ProdomE3PJE0 
UniProtKBL3UF86SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3UF86 
PFAML3UF86 
ProdomL3UF86 
UniProtKBL3WH05SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3WH05 
PFAML3WH05 
ProdomL3WH05 
UniProtKBE9WTV2SubName: Full=Extracellular solute-binding protein;
InterProE9WTV2 
PFAME9WTV2 
ProdomE9WTV2 
UniProtKBE9Y2S8SubName: Full=Extracellular solute-binding protein;
InterProE9Y2S8 
PFAME9Y2S8 
ProdomE9Y2S8 
UniProtKBH4VLS1SubName: Full=Putative binding protein ygiS;
InterProH4VLS1 
PFAMH4VLS1 
ProdomH4VLS1 
UniProtKBG2AZB4SubName: Full=Putative binding protein ygiS;
InterProG2AZB4 
PFAMG2AZB4 
ProdomG2AZB4 
UniProtKBA0A064T7R4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDG92661.1};
InterProA0A064T7R4 
PFAMA0A064T7R4 
ProdomA0A064T7R4 
UniProtKBA0A070UR46SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDX43969.1};
InterProA0A070UR46 
PFAMA0A070UR46 
ProdomA0A070UR46 
UniProtKBA0A070Y4D5SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDX85991.1};
InterProA0A070Y4D5 
PFAMA0A070Y4D5 
ProdomA0A070Y4D5 
UniProtKBA0A071AX29SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDY60963.1};
InterProA0A071AX29 
PFAMA0A071AX29 
ProdomA0A071AX29 
UniProtKBA0A071BSY9SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDY85518.1};
InterProA0A071BSY9 
PFAMA0A071BSY9 
ProdomA0A071BSY9 
UniProtKBA0A071CBD3SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDZ14013.1};
InterProA0A071CBD3 
PFAMA0A071CBD3 
ProdomA0A071CBD3 
UniProtKBA0A071DBU0SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDZ38647.1};
InterProA0A071DBU0 
PFAMA0A071DBU0 
ProdomA0A071DBU0 
UniProtKBA0A073GMP3SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KEJ66270.1};
InterProA0A073GMP3 
PFAMA0A073GMP3 
ProdomA0A073GMP3 
UniProtKBA0A074HLY4SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KEN95765.1};
InterProA0A074HLY4 
PFAMA0A074HLY4 
ProdomA0A074HLY4 
UniProtKBA0A074IC87SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KEO08046.1};
InterProA0A074IC87 
PFAMA0A074IC87 
ProdomA0A074IC87 
UniProtKBA0A037YL14SubName: Full=ABC transporter periplasmic-binding protein {ECO:0000313|EMBL:KLX34359.1};SubName: Full=ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIG75016.1};SubName: Full=Binding prot
InterProA0A037YL14 
PFAMA0A037YL14 
ProdomA0A037YL14 
UniProtKBL2Z391SubName: Full=ABC transporter periplasmic-binding protein;
InterProL2Z391 
PFAML2Z391 
ProdomL2Z391 
UniProtKBB2NCA7SubName: Full=Bacterial extracellular solute-binding protein, family 5;
InterProB2NCA7 
PFAMB2NCA7 
ProdomB2NCA7 
UniProtKBI2XHS0SubName: Full=Periplasmic oligopeptide-binding protein {ECO:0000313|EMBL:EII48540.1};
InterProI2XHS0 
PFAMI2XHS0 
ProdomI2XHS0 
UniProtKBI2YCE1SubName: Full=Periplasmic oligopeptide-binding protein;
InterProI2YCE1 
PFAMI2YCE1 
ProdomI2YCE1 
UniProtKBI2PJY9SubName: Full=Uncharacterized protein;
InterProI2PJY9 
PFAMI2PJY9 
ProdomI2PJY9 
UniProtKBK3IJK8SubName: Full=Putative binding protein ygiS;
InterProK3IJK8 
PFAMK3IJK8 
ProdomK3IJK8 
UniProtKBK3IHY7SubName: Full=Putative binding protein ygiS;
InterProK3IHY7 
PFAMK3IHY7 
ProdomK3IHY7 
UniProtKBK5HH52SubName: Full=Putative binding protein ygiS;
InterProK5HH52 
PFAMK5HH52 
ProdomK5HH52 
UniProtKBK3GY84SubName: Full=Putative binding protein ygiS;
InterProK3GY84 
PFAMK3GY84 
ProdomK3GY84 
UniProtKBA8A4H7SubName: Full=Bacterial extracellular solute-binding protein, family 5;
InterProA8A4H7 
PFAMA8A4H7 
ProdomA8A4H7 
UniProtKBL2VGG7SubName: Full=ABC transporter periplasmic-binding protein {ECO:0000313|EMBL:ELC14343.1};
InterProL2VGG7 
PFAML2VGG7 
ProdomL2VGG7 
UniProtKBB1ISD6SubName: Full=Extracellular solute-binding protein family 5;Flags: Precursor;
InterProB1ISD6 
PFAMB1ISD6 
ProdomB1ISD6 
UniProtKBA0A079D1Y8SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDY16865.1};
InterProA0A079D1Y8 
PFAMA0A079D1Y8 
ProdomA0A079D1Y8 
UniProtKBL3M1F1SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3M1F1 
PFAML3M1F1 
ProdomL3M1F1 
UniProtKBA0A079F913SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDY52579.1};
InterProA0A079F913 
PFAMA0A079F913 
ProdomA0A079F913 
UniProtKBL3TL59SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3TL59 
PFAML3TL59 
ProdomL3TL59 
UniProtKBA0A080HXB0SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KEO22464.1};
InterProA0A080HXB0 
PFAMA0A080HXB0 
ProdomA0A080HXB0 
UniProtKBA0A0H3MUJ6SubName: Full=Transporter subunit: periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CAR19631.1};
InterProA0A0H3MUJ6 
PFAMA0A0H3MUJ6 
ProdomA0A0H3MUJ6 
UniProtKBH4V5Y4SubName: Full=Periplasmic oligopeptide-binding protein {ECO:0000313|EMBL:EHV53578.1};
InterProH4V5Y4 
PFAMH4V5Y4 
ProdomH4V5Y4 
UniProtKBI2I260SubName: Full=Putative ABC transporter periplasmic-binding protein;
InterProI2I260 
PFAMI2I260 
ProdomI2I260 
UniProtKBI4J8G5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF85524.1};
InterProI4J8G5 
PFAMI4J8G5 
ProdomI4J8G5 
UniProtKBK5HJY1SubName: Full=Putative binding protein ygiS;
InterProK5HJY1 
PFAMK5HJY1 
ProdomK5HJY1 
UniProtKBB1XG25SubName: Full=Predicted transporter subunit: periplasmic-binding component of ABC superfamily;
InterProB1XG25 
PFAMB1XG25 
ProdomB1XG25 
UniProtKBL2U4P3SubName: Full=ABC transporter periplasmic-binding protein;
InterProL2U4P3 
PFAML2U4P3 
ProdomL2U4P3 
UniProtKBC5W8X6SubName: Full=Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACT27788.1};
InterProC5W8X6 
PFAMC5W8X6 
ProdomC5W8X6 
UniProtKBC9QYZ1SubName: Full=Binding protein;SubName: Full=Extracellular solute-binding protein family 5;Flags: Precursor;
InterProC9QYZ1 
PFAMC9QYZ1 
ProdomC9QYZ1 
UniProtKBL3IPC2SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3IPC2 
PFAML3IPC2 
ProdomL3IPC2 
UniProtKBA0A079FSA1SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDY63298.1};
InterProA0A079FSA1 
PFAMA0A079FSA1 
ProdomA0A079FSA1 
UniProtKBL3HA62SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3HA62 
PFAML3HA62 
ProdomL3HA62 
UniProtKBA0A079GU01SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KDY91810.1};
InterProA0A079GU01 
PFAMA0A079GU01 
ProdomA0A079GU01 
UniProtKBI2QYU0SubName: Full=Putative binding protein ygiS;
InterProI2QYU0 
PFAMI2QYU0 
ProdomI2QYU0 
UniProtKBC4ZQT9SubName: Full=Predicted transporter subunit: periplasmic-binding component of ABC superfamily;
InterProC4ZQT9 
PFAMC4ZQT9 
ProdomC4ZQT9 
UniProtKBD8B872SubName: Full=ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFJ64697.1};
InterProD8B872 
PFAMD8B872 
ProdomD8B872 
UniProtKBA0A080GKC7SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:KEN88299.1};
InterProA0A080GKC7 
PFAMA0A080GKC7 
ProdomA0A080GKC7 
UniProtKBH4UP72SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:EHV54773.1};
InterProH4UP72 
PFAMH4UP72 
ProdomH4UP72 
UniProtKBI2ZSR5SubName: Full=Periplasmic oligopeptide-binding protein;
InterProI2ZSR5 
PFAMI2ZSR5 
ProdomI2ZSR5 
UniProtKBL2XXN6SubName: Full=ABC transporter periplasmic-binding protein;
InterProL2XXN6 
PFAML2XXN6 
ProdomL2XXN6 
UniProtKBL3QQ65SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3QQ65 
PFAML3QQ65 
ProdomL3QQ65 
UniProtKBD7XFA3SubName: Full=ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFJ71042.1};
InterProD7XFA3 
PFAMD7XFA3 
ProdomD7XFA3 
UniProtKBL3CRT9SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3CRT9 
PFAML3CRT9 
ProdomL3CRT9 
UniProtKBI2YE42SubName: Full=Periplasmic oligopeptide-binding protein;
InterProI2YE42 
PFAMI2YE42 
ProdomI2YE42 
UniProtKBK3KL45SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:EKI50302.1};
InterProK3KL45 
PFAMK3KL45 
ProdomK3KL45 
UniProtKBK5C563SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:EKJ83875.1};
InterProK5C563 
PFAMK5C563 
ProdomK5C563 
UniProtKBE9YET8SubName: Full=Extracellular solute-binding protein {ECO:0000313|EMBL:EGB67079.1};
InterProE9YET8 
PFAME9YET8 
ProdomE9YET8 
UniProtKBL3A774SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3A774 
PFAML3A774 
ProdomL3A774 
UniProtKBB7ND11SubName: Full=Transporter subunit: periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CAR14661.1};
InterProB7ND11 
PFAMB7ND11 
ProdomB7ND11 
UniProtKBB7NJ21SubName: Full=Transporter subunit: periplasmic-binding component of ABC superfamily;
InterProB7NJ21 
PFAMB7NJ21 
ProdomB7NJ21 
UniProtKBL3DYI4SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3DYI4 
PFAML3DYI4 
ProdomL3DYI4 
UniProtKBL3I171SubName: Full=ABC transporter periplasmic-binding protein {ECO:0000313|EMBL:ELD68100.1};
InterProL3I171 
PFAML3I171 
ProdomL3I171 
UniProtKBC6EHX3SubName: Full=Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACT27788.1};
InterProC6EHX3 
PFAMC6EHX3 
ProdomC6EHX3 
UniProtKBF4SPU9SubName: Full=Putative binding protein YgiS {ECO:0000313|EMBL:EGI09415.1};
InterProF4SPU9 
PFAMF4SPU9 
ProdomF4SPU9 
UniProtKBH9UWQ8SubName: Full=Putative binding protein ygiS {ECO:0000313|EMBL:AFG41951.1};
InterProH9UWQ8 
PFAMH9UWQ8 
ProdomH9UWQ8 
UniProtKBH4X9J9SubName: Full=Periplasmic oligopeptide-binding protein;
InterProH4X9J9 
PFAMH4X9J9 
ProdomH4X9J9 
UniProtKBE1HGY9SubName: Full=ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFK92801.1};
InterProE1HGY9 
PFAME1HGY9 
ProdomE1HGY9 
UniProtKBL3V8Y1SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3V8Y1 
PFAML3V8Y1 
ProdomL3V8Y1 
UniProtKBE9WIL6SubName: Full=Bacterial extracellular solute-binding protein;
InterProE9WIL6 
PFAME9WIL6 
ProdomE9WIL6 
UniProtKBL3RDK1SubName: Full=ABC transporter periplasmic-binding protein;
InterProL3RDK1 
PFAML3RDK1 
ProdomL3RDK1 
UniProtKBA0A0A0FL75SubName: Full=Transporter subunit YgiS {ECO:0000313|EMBL:KGM62292.1};
InterProA0A0A0FL75 
PFAMA0A0A0FL75 
ProdomA0A0A0FL75 
UniProtKBA0A0E1M3C5SubName: Full=Putative inner membrane ABC superfamily transporter permease {ECO:0000313|EMBL:AJF57843.1};
InterProA0A0E1M3C5 
PFAMA0A0E1M3C5 
ProdomA0A0E1M3C5 
UniProtKBA0A0H3XCZ6SubName: Full=Transporter subunit {ECO:0000313|EMBL:AKM36536.1};
InterProA0A0H3XCZ6 
PFAMA0A0H3XCZ6 
ProdomA0A0H3XCZ6 
UniProtKBG2F709SubName: Full=Putative ABC transporter periplasmic-binding protein;
InterProG2F709 
PFAMG2F709 
ProdomG2F709 
UniProtKBH0QEI0SubName: Full=Predicted transporter subunit;
InterProH0QEI0 
PFAMH0QEI0 
ProdomH0QEI0 
UniProtKBC6UE73SubName: Full=Predicted transporter subunit: periplasmic-binding component of ABC superfamily;
InterProC6UE73 
PFAMC6UE73 
ProdomC6UE73