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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q47138.2
Original Database ID UP Q47138
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation ydfe_ecoli recname: full=putative
uncharacterized protein ydfe;
altname: full=or f6
Sequence Length 255

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region83-201
Protein Length255
Template PDB Code3q23A
Template Region968-1100
Sequence Identity21%
E-Value0.031
GA3410.2
MPQS0.316667
z-DOPE1.01
TSVMod MethodMSALL
TSVMod RMSD15.648
TSVMod NO350.055
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3q23
DBALI3q23A 
JenaImageLibrary3q23 
Target Sequence
UniProtKBM2NV14SubName: Full=Uncharacterized protein;Flags: Fragment;
InterProM2NV14 
PFAMM2NV14 
ProdomM2NV14 
UniProtKBP77663RecName: Full=Putative uncharacterized protein YdfE;AltName: Full=ORF6;Flags: Fragment;
InterProP77663 
PFAMP77663 
ProdomP77663 
UniProtKBQ47138RecName: Full=Putative uncharacterized protein YdfE;AltName: Full=ORF6;Flags: Fragment;
InterProQ47138 
PFAMQ47138 
ProdomQ47138 
UniProtKBA0A7A7G608SubName: Full=Exonuclease {ECO:0000313|EMBL:HAJ1281328.1}Flags: Fragment
InterProA0A7A7G608 
PFAMA0A7A7G608 
ProdomA0A7A7G608 
UniProtKBP77663RecName: Full=Putative uncharacterized protein YdfE;AltName: Full=ORF6;Flags: Fragment;
InterProP77663 
PFAMP77663 
ProdomP77663 
UniProtKBQ47138RecName: Full=Putative uncharacterized protein YdfE;AltName: Full=ORF6;Flags: Fragment;
InterProQ47138 
PFAMQ47138 
ProdomQ47138 
UniProtKBQ47138.2YDFE_ECOLI RecName: Full=Putative uncharacterized protein ydfE; AltName: Full=ORF6
InterProQ47138.2 
PFAMQ47138.2 
ProdomQ47138.2 
RefSeqWP_001776066.1hypothetical protein, partial
GenPept2495607YDFE_ECOLI RecName: Full=Putative uncharacterized protein ydfE; AltName: Full=ORF6