University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A5A606
Original Database ID ref YP_001165308.1
Organism Escherichia coli, Shigella sonnei, etc.
Annotation recname: full=uncharacterized
protein ylch;
Sequence Length 33

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region1-30
Protein Length33
Template PDB Code3a77D
Template Region393-423
Sequence Identity27%
E-Value0
GA3410.02
MPQS1.05269
z-DOPE1.09
TSVMod MethodMSALL
TSVMod RMSD7.051
TSVMod NO350.181
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3a77the crystal structure of phosphorylated irf-3
DBALI3a77D 
JenaImageLibrary3a77 
Target Sequence
UniProtKBA5A606RecName: Full=Uncharacterized protein YlcH;
InterProA5A606 
PFAMA5A606 
ProdomA5A606 
UniProtKBQ47268RecName: Full=Uncharacterized protein YlcH;
InterProQ47268 
PFAMQ47268 
ProdomQ47268 
UniProtKBD3QKP8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ADD55303.1};
InterProD3QKP8 
PFAMD3QKP8 
ProdomD3QKP8 
UniProtKBC6EKE6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT30113.1};
InterProC6EKE6 
PFAMC6EKE6 
ProdomC6EKE6 
UniProtKBC4ZUZ1SubName: Full=Putative uncharacterized protein ylcH;
InterProC4ZUZ1 
PFAMC4ZUZ1 
ProdomC4ZUZ1 
UniProtKBA0A656P4C6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:HAV85070.1}
InterProA0A656P4C6 
PFAMA0A656P4C6 
ProdomA0A656P4C6 
UniProtKBA0A6M0JU97SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QJZ98563.1}
InterProA0A6M0JU97 
PFAMA0A6M0JU97 
ProdomA0A6M0JU97 
UniProtKBA0A6M6NZM8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QJZ03069.1}
InterProA0A6M6NZM8 
PFAMA0A6M6NZM8 
ProdomA0A6M6NZM8 
UniProtKBA0A6M6WZ20SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QJZ98563.1}
InterProA0A6M6WZ20 
PFAMA0A6M6WZ20 
ProdomA0A6M6WZ20 
UniProtKBA0A140NCY7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT30113.1}
InterProA0A140NCY7 
PFAMA0A140NCY7 
ProdomA0A140NCY7 
UniProtKBA0A5Z3QIH3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ECR8120292.1}
InterProA0A5Z3QIH3 
PFAMA0A5Z3QIH3 
ProdomA0A5Z3QIH3 
UniProtKBA0A2T3U0D2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:PSZ16586.1}
InterProA0A2T3U0D2 
PFAMA0A2T3U0D2 
ProdomA0A2T3U0D2 
UniProtKBA0A833NRN3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KAE9904911.1}
InterProA0A833NRN3 
PFAMA0A833NRN3 
ProdomA0A833NRN3 
UniProtKBA0A1X0PL32SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:PAQ98772.1}
InterProA0A1X0PL32 
PFAMA0A1X0PL32 
ProdomA0A1X0PL32 
UniProtKBA0A7U8MU44SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFA7741998.1}
InterProA0A7U8MU44 
PFAMA0A7U8MU44 
ProdomA0A7U8MU44 
UniProtKBA0A7U8VR83SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFE1062730.1}
InterProA0A7U8VR83 
PFAMA0A7U8VR83 
ProdomA0A7U8VR83 
UniProtKBA0A826IAM8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFA4034164.1}
InterProA0A826IAM8 
PFAMA0A826IAM8 
ProdomA0A826IAM8 
UniProtKBA0A8A5H398SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QTF23276.1}
InterProA0A8A5H398 
PFAMA0A8A5H398 
ProdomA0A8A5H398 
UniProtKBA0A8F8DDM6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QXZ35883.1}
InterProA0A8F8DDM6 
PFAMA0A8F8DDM6 
ProdomA0A8F8DDM6 
UniProtKBA0A8F9N3W9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QYE38296.1}
InterProA0A8F9N3W9 
PFAMA0A8F9N3W9 
ProdomA0A8F9N3W9 
UniProtKBD3QKP8SubName: Full=Putative uncharacterized protein ylcH;
InterProD3QKP8 
PFAMD3QKP8 
ProdomD3QKP8 
UniProtKBC6EKE6SubName: Full=Putative uncharacterized protein ylcH;
InterProC6EKE6 
PFAMC6EKE6 
ProdomC6EKE6 
UniProtKBC4ZUZ1SubName: Full=Putative uncharacterized protein ylcH;
InterProC4ZUZ1 
PFAMC4ZUZ1 
ProdomC4ZUZ1 
UniProtKBA0A659ZJF6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:TJX68809.1}
InterProA0A659ZJF6 
PFAMA0A659ZJF6 
ProdomA0A659ZJF6 
UniProtKBA5A606RecName: Full=Uncharacterized protein YlcH;
InterProA5A606 
PFAMA5A606 
ProdomA5A606 
UniProtKBQ47268RecName: Full=Uncharacterized protein YlcH;
InterProQ47268 
PFAMQ47268 
ProdomQ47268 
UniProtKBQ47268.1YLCH_ECOLI RecName: Full=Uncharacterized protein ylcH in lambdoid DLP12 prophage region
InterProQ47268.1 
PFAMQ47268.1 
ProdomQ47268.1 
RefSeqZP_03083332.1 hypothetical protein EscherichcoliO157_16176 [Escherichia coli O157:H7 str. EC4024]
RefSeqYP_003498287.1 hypothetical protein G2583_0679 [Escherichia coli O55:H7 str. CB9615]
RefSeqYP_003037298.1 hypothetical protein ECBD_3111 [Escherichia coli BL21-Gold(DE3)pLysS AG]
RefSeqYP_002925620.1 hypothetical protein BWG_0418 [Escherichia coli BW2952]
RefSeqYP_001165308.1 hypothetical protein, DLP12 prophage [Escherichia coli str. K-12 substr. MG1655]
GenPept238861494hypothetical protein, DLP12 prophage
GenPept238899824 hypothetical protein BWG_0418 [Escherichia coli BW2952]
GenPept253774467 hypothetical protein ECBD_3111 [Escherichia coli BL21-Gold(DE3)pLysS AG]
GenPept9911043YLCH_ECOLI RecName: Full=Uncharacterized protein ylcH in lambdoid DLP12 prophage region
GenPept2121201S66586 hypothetical protein 33 - Escherichia coli cryptic lambdoid prophage DLP12
GenPept195937950 hypothetical protein EscherichcoliO157_16176 [Escherichia coli O157:H7 str. EC4024]
GenPept145698228 hypothetical protein, DLP12 prophage [Escherichia coli str. K-12 substr. MG1655]
GenPept253325511hypothetical protein ECBD_3111
GenPept145693101uncharacterized protein, DLP12 prophage
GenPept1051137unnamed protein product
GenPept290761342hypothetical protein G2583_0679
GenPept291281469 hypothetical protein G2583_0679 [Escherichia coli O55:H7 str. CB9615]
GenPept687675732DLP12 prophage; hypothetical protein
GenPept730585688hypothetical protein, DLP12 prophage
GenPept731473417hypothetical protein, DLP12 prophage
GenPept802134126hypothetical protein, DLP12 prophage
GenPept817573885uncharacterized protein, DLP12 prophage
GenPept817578027uncharacterized protein, DLP12 prophage
GenPept817582166uncharacterized protein, DLP12 prophage
GenPept817586307uncharacterized protein, DLP12 prophage
GenPept687671473DLP12 prophage; hypothetical protein
GenPept682118110uncharacterized protein, DLP12 prophage
GenPept817590448uncharacterized protein, DLP12 prophage
GenPept557270938hypothetical protein BN896_0418
GenPept549812066putative prophage protein
GenPept313848557DLP12 prophage; hypothetical protein
GenBankACR63492.1 hypothetical protein, DLP12 prophage [Escherichia coli BW2952]
GenBankABP93435.1 hypothetical protein, DLP12 prophage [Escherichia coli str. K-12 substr. MG1655]
GenBankACT30113.1 hypothetical protein ECBD_3111 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
GenBankADD55303.1 hypothetical protein G2583_0679 [Escherichia coli O55:H7 str. CB9615]
EMBLCAA63317.1