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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link A8K4C8
Original Database ID EN GENSCAN00000033799
Organism Homo sapiens, synthetic construct
Annotation recname: full=60s ribosomal protein
l13;
Sequence Length 211

Dataset Information:

The newest dataset for this sequence was created on 2016-06-12. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region122-211
Protein Length211
Template PDB Code1w9rA
Template Region14-118
Sequence Identity32%
E-Value0.59
GA3410.06
MPQS0.52684
z-DOPE0.3
TSVMod MethodMTALL
TSVMod RMSD21.392
TSVMod NO350.048
DatasetMW-Human_D11
ModPipe VersionSVN.r1600
Model Date2016-06-12

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
PharmGKB   PharmGKB data available for RPL13
Template Structure
PDB1w9rsolution structure of choline binding protein a, domain r2, the major adhesin of streptococcus pneumoniae
DBALI1w9rA 
JenaImageLibrary1w9r 
Target Sequence
UniProtKBB4DLX3RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProB4DLX3 
PFAMB4DLX3 
ProdomB4DLX3 
UniProtKBF5H1S2RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProF5H1S2 
PFAMF5H1S2 
ProdomF5H1S2 
UniProtKBQ567Q8RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProQ567Q8 
PFAMQ567Q8 
ProdomQ567Q8 
UniProtKBP26373RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProP26373 
PFAMP26373 
ProdomP26373 
UniProtKBQ3KQT8RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProQ3KQT8 
PFAMQ3KQT8 
ProdomQ3KQT8 
UniProtKBA8K4C8RecName: Full=60S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572};
InterProA8K4C8 
PFAMA8K4C8 
ProdomA8K4C8 
UniProtKBQ9BPX0RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProQ9BPX0 
PFAMQ9BPX0 
ProdomQ9BPX0 
UniProtKBQ3KQT8Ribosomal protein L13
InterProQ3KQT8 
PFAMQ3KQT8 
ProdomQ3KQT8 
UniProtKBA8K4C8RecName: Full=60S ribosomal protein L13;
InterProA8K4C8 
PFAMA8K4C8 
ProdomA8K4C8 
UniProtKBQ9BPX0Hypothetical 24.3 kDa protein (Ribosomal protein L13) (Unknown)DE (protein for MGC:15073) (protein for MGC:17534)
InterProQ9BPX0 
PFAMQ9BPX0 
ProdomQ9BPX0 
UniProtKBQ9BPX0RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProQ9BPX0 
PFAMQ9BPX0 
ProdomQ9BPX0 
UniProtKBB4DLX3RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProB4DLX3 
PFAMB4DLX3 
ProdomB4DLX3 
UniProtKBF5H1S2RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProF5H1S2 
PFAMF5H1S2 
ProdomF5H1S2 
UniProtKBQ567Q8RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProQ567Q8 
PFAMQ567Q8 
ProdomQ567Q8 
UniProtKBQ3KQT8RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProQ3KQT8 
PFAMQ3KQT8 
ProdomQ3KQT8 
UniProtKBP26373RecName: Full=60S ribosomal protein L13;AltName: Full=Breast basic conserved protein 1;
InterProP26373 
PFAMP26373 
ProdomP26373 
UniProtKBP26373.4RL13_HUMAN RecName: Full=60S ribosomal protein L13; AltName: Full=Breast basic conserved protein 1
InterProP26373.4 
PFAMP26373.4 
ProdomP26373.4 
RefSeqNP_000968.2 60S ribosomal protein L13 [Homo sapiens]
RefSeqNP_150254.1 60S ribosomal protein L13 [Homo sapiens]
PDB4UPXLChain L, Mammalian 80s Hcv-ires Initiation Complex With Eif5b Pre-like State
PDB4UQ1LChain L, Mammalian 80s Hcv-ires Initiation Complex With Eif5b Post-like State
PDB4V6XCL Chain CL, 60S ribosomal protein L13
PDB6IP62F Chain 2F, 60S ribosomal protein L13
PDB6Y57LL Chain LL, 60S ribosomal protein L13
PDB5AJ0AL Chain AL, 60S ribosomal protein L13
PDB5T2Cr60S ribosomal protein L13
PDB6Y2LLL Chain LL, 60S ribosomal protein L13
PDB6Y0GLL Chain LL, 60S ribosomal protein L13
PDB6W6LMCryo-EM structure of the human ribosome-TMCO1 translocon
PDB6IP82F Chain 2F, 60S ribosomal protein L13
PDB6IP52F Chain 2F, 60S ribosomal protein L13
PDB4UJECL Chain CL, 60S RIBOSOMAL PROTEIN L13
PDB4UG0LL Chain LL, 60S RIBOSOMAL PROTEIN L13
PDB4D67LCryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
PDB7BHPLL Chain LL, 60S ribosomal protein L13
PDB6ZMOLL Chain LL, 60S ribosomal protein L13
PDB6ZMILL Chain LL, 60S ribosomal protein L13
PDB6ZMELL Chain LL, 60S ribosomal protein L13
PDB6ZM7LL Chain LL, 60S ribosomal protein L13
PDB6Z6NLL Chain LL, 60S ribosomal protein L13
PDB3J3BLChain L, Structure Of The Human 60s Ribosomal Proteins
PDB6Z6MLL Chain LL, 60S ribosomal protein L13
PDB4CXDLChain L, Regulation Of The Mammalian Elongation Cycle By 40s Subunit Rolling: A Eukaryotic-specific Ribosome Rearrangement
PDB4D5YLCryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
GenPept76780213Ribosomal protein L13
GenPept568533877Sequence 19642 from patent US 8586006
GenPept15029604Ribosomal protein L13
GenPept672884438L Chain L, Mammalian 80s Hcv-ires Initiation Complex With Eif5b Post-like State
GenPept119587128ribosomal protein L13, isoform CRA_a
GenPept13938412Ribosomal protein L13
GenPept15559613Ribosomal protein L13
GenPept15431295 60S ribosomal protein L13 [Homo sapiens]
GenPept15341812Ribosomal protein L13
GenPept15317415 ribosomal protein L13 [Homo sapiens]
GenPept14776723 ribosomal protein L13 [Homo sapiens]
GenPept14776718 ribosomal protein L13 [Homo sapiens]
GenPept14776716 ribosomal protein L13 [Homo sapiens]
GenPept14776712 ribosomal protein L13 [Homo sapiens]
GenPept14043668Ribosomal protein L13
GenPept14043151Ribosomal protein L13
GenPept13436332RPL13 protein
GenPept123995921ribosomal protein L13, partial
GenPept123981112ribosomal protein L13
GenPept119587129ribosomal protein L13, isoform CRA_a
GenPept15431297 60S ribosomal protein L13 [Homo sapiens]
GenPept21104418ribosomal protein L13
GenPept21903462RL13_HUMAN RecName: Full=60S ribosomal protein L13; AltName: Full=Breast basic conserved protein 1
GenPept261858550ribosomal protein L13, partial
GenPept20071962Ribosomal protein L13
GenPept397148657Sequence 507 from patent US 8211634
GenPept39793982Ribosomal protein L13
GenPept485601425L Chain L, Structure Of The Human 60s Ribosomal Proteins
GenPept568533878Sequence 19643 from patent US 8586006
GenPept60656421ribosomal protein L13
GenPept193785374unnamed protein product
GenPept18088732RPL13 protein
GenPept649120980RPL13, partial
GenPept649120989RPL13, partial
GenPept649152972RPL13, partial
GenPept665764269L Chain L, Regulation Of The Mammalian Elongation Cycle By 40s Subunit Rolling: A Eukaryotic-specific Ribosome Rearrangement
GenPept158255222unnamed protein product
GenPept672884386L Chain L, Mammalian 80s Hcv-ires Initiation Complex With Eif5b Pre-like State
GenBankAAH27463.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH04954.1 RPL13 protein [Homo sapiens]
GenBankAAH63378.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH07345.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH07805.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH10994.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH13078.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH14167.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAH20804.1 RPL13 protein [Homo sapiens]
GenBankAAI06059.1 Ribosomal protein L13 [Homo sapiens]
GenBankAAX32774.1 ribosomal protein L13 [synthetic construct]
GenBankABM82385.1 ribosomal protein L13 [synthetic construct]
GenBankABM85562.1 ribosomal protein L13 [synthetic construct]
GenBankAAH07563.1 Ribosomal protein L13 [Homo sapiens]
GenBankEAW66724.1 ribosomal protein L13, isoform CRA_a [Homo sapiens]
GenBankEAW66725.1 ribosomal protein L13, isoform CRA_a [Homo sapiens]
ENSEMBLENSP0000030788960S ribosomal protein L13 (Breast basic conserved protein 1) (OK/SW- cl.46). [Homo sapiens]
ENSEMBLENSP00000307889 
ENSEMBLENSP00000307889TDI sequence
ENSEMBLGENSCAN00000027065 
ENSEMBLENSP00000307889