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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A8K2A4
Original Database ID snca
Organism Gorilla gorilla, Gorilla gorilla gorilla, etc.
Annotation subname: full=cdna flj76529, highly
similar to homo sapiens synuclein,
alpha (no n a4 component of amyloid)
(snca), transcript variant nacp140,
mrna;s ...
Sequence Length 140

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region1-140
Protein Length140
Template PDB Code2kkwA
Template Region1-140
Sequence Identity100%
E-Value0
GA3410.69
MPQS1.9749
z-DOPE0.87
TSVMod MethodMSALL
TSVMod RMSD9.008
TSVMod NO350.175
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2kkwslas-micelle bound alpha-synuclein
DBALI2kkwA 
JenaImageLibrary2kkw 
Target Sequence
UniProtKBP61144RecName: Full=Alpha-synuclein;
InterProP61144 
PFAMP61144 
ProdomP61144 
UniProtKBA8K2A4RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProA8K2A4 
PFAMA8K2A4 
ProdomA8K2A4 
UniProtKBQ6IAU6RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProQ6IAU6 
PFAMQ6IAU6 
ProdomQ6IAU6 
UniProtKBQ4JHI3RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProQ4JHI3 
PFAMQ4JHI3 
ProdomQ4JHI3 
UniProtKBP37840RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProP37840 
PFAMP37840 
ProdomP37840 
UniProtKBQ13701RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProQ13701 
PFAMQ13701 
ProdomQ13701 
UniProtKBP61140RecName: Full=Alpha-synuclein;
InterProP61140 
PFAMP61140 
ProdomP61140 
UniProtKBH2PDW8RecName: Full=Alpha-synuclein {ECO:0000256|RuleBase:RU361225};
InterProH2PDW8 
PFAMH2PDW8 
ProdomH2PDW8 
UniProtKBP61145RecName: Full=Alpha-synuclein;
InterProP61145 
PFAMP61145 
ProdomP61145 
UniProtKBQ6IAU6SNCA protein
InterProQ6IAU6 
PFAMQ6IAU6 
ProdomQ6IAU6 
UniProtKBQ4JHI3Synuclein, alpha (Non A4 component of amyloid)
InterProQ4JHI3 
PFAMQ4JHI3 
ProdomQ4JHI3 
UniProtKBA8K2A4SubName: Full=cDNA FLJ76529, highly similar to Homo sapiens synuclein, alpha (non A4 component of amyloid) (SNCA), transcript variant NACP140, mRNA;SubName: Full=Synuclein, alpha (Non A4 component of
InterProA8K2A4 
PFAMA8K2A4 
ProdomA8K2A4 
UniProtKBA0A8I5T8U5Alpha-synuclein {ECO:0000256|ARBA:ARBA00017952, ECO:0000256|RuleBase:RU361225}
InterProA0A8I5T8U5 
PFAMA0A8I5T8U5 
ProdomA0A8I5T8U5 
UniProtKBA0A6D2Y785Alpha-synuclein {ECO:0000256|ARBA:ARBA00017952, ECO:0000256|RuleBase:RU361225}
InterProA0A6D2Y785 
PFAMA0A6D2Y785 
ProdomA0A6D2Y785 
UniProtKBH2PDW8SubName: Full=Alpha-synuclein;
InterProH2PDW8 
PFAMH2PDW8 
ProdomH2PDW8 
UniProtKBA0A2J8MAD9Alpha-synuclein {ECO:0000256|ARBA:ARBA00017952, ECO:0000256|RuleBase:RU361225}
InterProA0A2J8MAD9 
PFAMA0A2J8MAD9 
ProdomA0A2J8MAD9 
UniProtKBA0A2J8V5H7Alpha-synuclein {ECO:0000256|ARBA:ARBA00017952, ECO:0000256|RuleBase:RU361225}
InterProA0A2J8V5H7 
PFAMA0A2J8V5H7 
ProdomA0A2J8V5H7 
UniProtKBA8K2A4RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProA8K2A4 
PFAMA8K2A4 
ProdomA8K2A4 
UniProtKBP61145RecName: Full=Alpha-synuclein;
InterProP61145 
PFAMP61145 
ProdomP61145 
UniProtKBP61140RecName: Full=Alpha-synuclein;
InterProP61140 
PFAMP61140 
ProdomP61140 
UniProtKBP61140.1SYUA_GORGO RecName: Full=Alpha-synuclein
InterProP61140.1 
PFAMP61140.1 
ProdomP61140.1 
UniProtKBP37840RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProP37840 
PFAMP37840 
ProdomP37840 
UniProtKBP61145.1SYUA_PANTR RecName: Full=Alpha-synuclein
InterProP61145.1 
PFAMP61145.1 
ProdomP61145.1 
UniProtKBQ4JHI3RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProQ4JHI3 
PFAMQ4JHI3 
ProdomQ4JHI3 
UniProtKBP61144RecName: Full=Alpha-synuclein;
InterProP61144 
PFAMP61144 
ProdomP61144 
UniProtKBQ6IAU6RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProQ6IAU6 
PFAMQ6IAU6 
ProdomQ6IAU6 
UniProtKBP61144.1SYUA_PANPA RecName: Full=Alpha-synuclein
InterProP61144.1 
PFAMP61144.1 
ProdomP61144.1 
UniProtKBQ13701RecName: Full=Alpha-synuclein;AltName: Full=Non-A beta component of AD amyloid;AltName: Full=Non-A4 component of amyloid precursor;Short=NACP;
InterProQ13701 
PFAMQ13701 
ProdomQ13701 
UniProtKBP37840.1SYUA_HUMAN RecName: Full=Alpha-synuclein; AltName: Full=Non-A beta component of AD amyloid; AltName: Full=Non-A4 component of amyloid precursor; Short=NACP
InterProP37840.1 
PFAMP37840.1 
ProdomP37840.1 
RefSeqXP_001162591.1 PREDICTED: alpha-synuclein isoform 9 [Pan troglodytes]
RefSeqXP_517341.2 PREDICTED: alpha-synuclein isoform 11 [Pan troglodytes]
RefSeqXP_001162542.1 PREDICTED: alpha-synuclein isoform 8 [Pan troglodytes]
RefSeqXP_034814808.1alpha-synuclein isoform X1
RefSeqXP_001162500.1 PREDICTED: alpha-synuclein isoform 7 [Pan troglodytes]
RefSeqXP_001162634.1 PREDICTED: alpha-synuclein isoform 10 [Pan troglodytes]
RefSeqXP_001162454.1 PREDICTED: alpha-synuclein isoform 6 [Pan troglodytes]
RefSeqNP_001362217.1alpha-synuclein isoform NACP140
RefSeqNP_001362214.1alpha-synuclein isoform NACP140
RefSeqNP_001362215.1alpha-synuclein isoform NACP140
RefSeqXP_001162416.1 PREDICTED: alpha-synuclein isoform 5 [Pan troglodytes]
RefSeqNP_001139527.1 alpha-synuclein isoform NACP140 [Homo sapiens]
RefSeqNP_001362216.1alpha-synuclein isoform NACP140
RefSeqNP_001139526.1 alpha-synuclein isoform NACP140 [Homo sapiens]
RefSeqNP_000336.1 alpha-synuclein isoform NACP140 [Homo sapiens]
RefSeqNP_001009158.1 alpha-synuclein [Pan troglodytes]
PDB2KKWAChain A, Slas-Micelle Bound Alpha-Synuclein
PDB2KKWA Chain A, Slas-Micelle Bound Alpha-Synuclein
PDB1XQ8A Chain A, Human Micelle-Bound Alpha-Synuclein
PDB1XQ8AChain A, Human Micelle-Bound Alpha-Synuclein
GenPept568654615Sequence 1 from patent US 8613905
GenPept586067SYUA_HUMAN RecName: Full=Alpha-synuclein; AltName: Full=Non-A beta component of AD amyloid; AltName: Full=Non-A4 component of amyloid precursor; Short=NACP
GenPept60594041A Chain A, Human Micelle-Bound Alpha-Synuclein
GenPept649103375SNCA, partial
GenPept914955822Sequence 1 from patent US 8940276
GenPept915414444Sequence 80 from patent US 8968734
GenPept80475099Synuclein, alpha (non A4 component of amyloid precursor)
GenPept157928420synuclein, alpha (non A4 component of amyloid precursor), partial
GenPept544069633Sequence 1 from patent US 8502016
GenPept11118352AF163864_1 SNCA isoform NACP140
GenPept208967552synuclein, alpha, partial
GenPept212288675unnamed protein product
GenPept2136215A49669 synuclein alpha - human
GenPept223087913Sequence 5929 from patent US 6812339
GenPept223612322Sequence 54 from patent US 7479482
GenPept225690602 alpha-synuclein isoform NACP140 [Homo sapiens]
GenPept225690604 alpha-synuclein isoform NACP140 [Homo sapiens]
GenPept259191097Sequence 16 from patent US 7550649
GenPept208610040 alpha-synuclein [Pan troglodytes]
GenPept162529516Sequence 1 from patent US 7306945
GenPept158261361unnamed protein product
GenPept11436429 alpha-synuclein isoform NACP140 [Homo sapiens]
GenPept114595148 PREDICTED: alpha-synuclein isoform 5 [Pan troglodytes]
GenPept114595152 PREDICTED: alpha-synuclein isoform 7 [Pan troglodytes]
GenPept114595154 PREDICTED: alpha-synuclein isoform 8 [Pan troglodytes]
GenPept114595156 PREDICTED: alpha-synuclein isoform 9 [Pan troglodytes]
GenPept119626441synuclein, alpha (non A4 component of amyloid precursor), isoform CRA_b
GenPept123983909synuclein, alpha (non A4 component of amyloid precursor)
GenPept15342042Synuclein, alpha (non A4 component of amyloid precursor)
GenPept259193682Sequence 1 from patent US 7553639
GenPept280990183Sequence 2 from patent US 7595306
GenPept294571761Sequence 1 from patent US 7674599
GenPept47117062SYUA_PANPA RecName: Full=Alpha-synuclein
GenPept47117063SYUA_PANTR RecName: Full=Alpha-synuclein
GenPept48146233SNCA
GenPept49456267SNCA, partial
GenPept507883923Sequence 2 from patent US 8389487
GenPept507903935Sequence 11 from patent US 8409575
GenPept534447857Sequence 13 from patent US 8491890
GenPept534486415Sequence 1 from patent US 8506959
GenPept47117058SYUA_GORGO RecName: Full=Alpha-synuclein
GenPept4507109 alpha-synuclein isoform NACP140 [Homo sapiens]
GenPept437365AD amyloid
GenPept36065785alpha-synuclein
GenPept36065792alpha-synuclein
GenPept36065813alpha-synuclein
GenPept383265080Sequence 1 from patent US 8147833
GenPept383268601Sequence 22 from patent US 8148089
GenPept389729045Sequence 1 from patent US 8158441
GenPept389948377Sequence 23 from patent US 8173861
GenPept397007073Sequence 1 from patent US 8092801
UCSCGenomeBrowserP37840 
ENSEMBLENSP00000310389 
ENSEMBLENSP00000310389TDI sequence
ENSEMBLENSP00000378437