University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P38432
Original Database ID EN ENSP00000240316.4
Organism Homo sapiens, synthetic construct
Annotation recname: full=coilin;altname:
full=p80-coilin;
Sequence Length 576

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region177-293
Protein Length576
Template PDB Code1w9rA
Template Region2-118
Sequence Identity15%
E-Value0.18
GA3410.02
MPQS0.414225
z-DOPE-0.73
TSVMod MethodMTALL
TSVMod RMSD21.115
TSVMod NO350.038
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB1w9rsolution structure of choline binding protein a, domain r2, the major adhesin of streptococcus pneumoniae
DBALI1w9rA 
JenaImageLibrary1w9r 
Target Sequence
UniProtKBP38432RecName: Full=Coilin;AltName: Full=p80;
InterProP38432 
PFAMP38432 
ProdomP38432 
UniProtKBB2R931RecName: Full=Coilin;AltName: Full=p80;
InterProB2R931 
PFAMB2R931 
ProdomB2R931 
UniProtKBB2R931SubName: Full=Coilin;SubName: Full=cDNA, FLJ94186, Homo sapiens coilin (COIL), mRNA;
InterProB2R931 
PFAMB2R931 
ProdomB2R931 
UniProtKBP38432.1P80C_HUMAN RecName: Full=Coilin; AltName: Full=p80
InterProP38432.1 
PFAMP38432.1 
ProdomP38432.1 
UniProtKBP38432RecName: Full=Coilin;AltName: Full=p80-coilin;
InterProP38432 
PFAMP38432 
ProdomP38432 
UniProtKBB2R931RecName: Full=Coilin;AltName: Full=p80-coilin;
InterProB2R931 
PFAMB2R931 
ProdomB2R931 
RefSeqNP_004636.1 coilin [Homo sapiens]
GenPept1082676S50113 coilin, p80 - human
GenPept585632P80C_HUMAN RecName: Full=Coilin; AltName: Full=p80
GenPept568534497Sequence 22122 from patent US 8586006
GenPept4758024 coilin [Homo sapiens]
GenPept119614928coilin
GenPept123988675coilin
GenPept123999190coilin, partial
GenPept14714509Coilin
GenPept14769708 hypothetical protein XP_042176 [Homo sapiens]
GenPept189069346unnamed protein product
GenPept458436p80-coilin
GenBankABM87175.1 coilin [synthetic construct]
GenBankEAW94522.1 coilin [Homo sapiens]
GenBankABM83853.1 coilin [synthetic construct]
GenBankAAB81550.1 p80-coilin [Homo sapiens]
GenBankAAH10385.1 Coilin [Homo sapiens]
ENSEMBLENSP00000240316Coilin (p80). [Homo sapiens]
ENSEMBLENSP00000240316 
ENSEMBLENSP00000240316TDI sequence
ENSEMBLENSP00000240316 
UCSCGenomeBrowserP38432