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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link K7D4I8
Original Database ID EN GENSCAN00000015976
Organism Pan troglodytes, Homo sapiens
Annotation subname: full=tripartite motif
containing 28 {eco:0000313|embl:jaa40788.1};
Sequence Length 835

Dataset Information:

The newest dataset for this sequence was created on 2020-05-15. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region59-409
Protein Length835
Template PDB Code6qu1A
Template Region59-409
Sequence Identity100%
E-Value0
GA3411
MPQS0.994459
z-DOPE1.9
TSVMod MethodMSALL
TSVMod RMSD18.992
TSVMod NO350.319
DatasetMW-Human_D15
ModPipe VersionSVN.r1693
Model Date2020-05-15

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB6qu1
DBALI6qu1A 
JenaImageLibrary6qu1 
Target Sequence
UniProtKBQ13263RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ13263 
PFAMQ13263 
ProdomQ13263 
UniProtKBQ96IM1RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ96IM1 
PFAMQ96IM1 
ProdomQ96IM1 
UniProtKBK7D4I8SubName: Full=Tripartite motif containing 28 {ECO:0000313|EMBL:JAA40788.1};
InterProK7D4I8 
PFAMK7D4I8 
ProdomK7D4I8 
UniProtKBQ93040RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ93040 
PFAMQ93040 
ProdomQ93040 
UniProtKBO00677RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProO00677 
PFAMO00677 
ProdomO00677 
UniProtKBQ7Z632RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ7Z632 
PFAMQ7Z632 
ProdomQ7Z632 
UniProtKBA0A6D2YBM1SubName: Full=TRIM28 isoform 3 {ECO:0000313|EMBL:PNI23903.1}
InterProA0A6D2YBM1 
PFAMA0A6D2YBM1 
ProdomA0A6D2YBM1 
UniProtKBA0A2J8JMA4SubName: Full=Tripartite motif containing 28 {ECO:0000313|EMBL:JAA40788.1, ECO:0000313|Ensembl:ENSPTRP00000064302}
InterProA0A2J8JMA4 
PFAMA0A2J8JMA4 
ProdomA0A2J8JMA4 
UniProtKBQ13263.5TIF1B_HUMAN RecName: Full=Transcription intermediary factor 1-beta; Short=TIF1-beta; AltName: Full=KRAB-associated protein 1; Short=KAP-1; AltName: Full=KRAB-interacting protein 1; Short=KRIP-1; AltNa
InterProQ13263.5 
PFAMQ13263.5 
ProdomQ13263.5 
UniProtKBQ7Z632RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ7Z632 
PFAMQ7Z632 
ProdomQ7Z632 
UniProtKBQ13263RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ13263 
PFAMQ13263 
ProdomQ13263 
UniProtKBQ93040RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ93040 
PFAMQ93040 
ProdomQ93040 
UniProtKBO00677RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProO00677 
PFAMO00677 
ProdomO00677 
UniProtKBQ96IM1RecName: Full=Transcription intermediary factor 1-beta;Short=TIF1-beta;AltName: Full=E3 SUMO-protein ligase TRIM28;EC=6.3.2.-;AltName: Full=KRAB-associated protein 1;Short=KAP-1;AltName: Full=KRAB-int
InterProQ96IM1 
PFAMQ96IM1 
ProdomQ96IM1 
RefSeqXP_018870952.2transcription intermediary factor 1-beta
RefSeqNP_005753.1 transcription intermediary factor 1-beta [Homo sapiens]
RefSeqXP_034800659.1transcription intermediary factor 1-beta
GenPept119593013tripartite motif-containing 28, isoform CRA_c
GenPept649105887TRIM28, partial
GenPept314282364Sequence 15 from patent US 7776555
GenPept314282363Sequence 14 from patent US 7776555
GenPept223091669Sequence 9685 from patent US 6812339
GenPept1930059hKAP1/TIF1B
GenPept168278114tripartite motif-containing protein 28, partial
GenPept1524109TIF1beta zinc finger protein
GenPept14755604 similar to GASTRIN/CHOLECYSTOKININ TYPE B RECEPTOR (CCK-B RECEPTOR) (CCK-BR) (H. sapiens) [Homo sapiens]
GenPept13436401Tripartite motif-containing 28
GenPept314879866Sequence 108 from patent US 7842467
GenPept314879867Sequence 109 from patent US 7842467
GenPept3183179TIF1B_HUMAN RecName: Full=Transcription intermediary factor 1-beta; Short=TIF1-beta; AltName: Full=KRAB-associated protein 1; Short=KAP-1; AltName: Full=KRAB-interacting protein 1; Short=KRIP-1; AltNa
GenPept336158049Sequence 480 from patent US 7960100
GenPept336158050Sequence 481 from patent US 7960100
GenPept5032179 transcription intermediary factor 1-beta [Homo sapiens]
GenPept507868484Sequence 17 from patent US 8426140
GenBankAAH04978.1 Tripartite motif-containing 28 [Homo sapiens]
GenBankEAW72607.1 tripartite motif-containing 28, isoform CRA_c [Homo sapiens]
GenBankAAB51517.1 hKAP1/TIF1B [Homo sapiens]
ENSEMBLENSP00000253024Transcription intermediary factor 1-beta (TIF1-beta) (Tripartite motif protein 28) (Nuclear corepressor KAP-1) (KRAB-associated protein 1) (KAP-1) (KRAB-interacting protein 1) (KRIP-1) (RING finger pr
EMBLCAA66150.1 
UCSCGenomeBrowserQ13263 
ENSEMBLENSP00000253024 
IPIIPI00438229.1 
ENSEMBLENSP00000253024TDI sequence
ENSEMBLGENSCAN00000006245 
ENSEMBLENSP00000253024