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ModBase: Database of Comparative Protein Structure Models

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TARGETMODEL DATATEMPLATE
Model
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Reliability
Sequence
Database
Link
Database AnnotationOrganismProtein
Size
Modeled
Segment
SizeSeq
Id(%)
PDB
code
PDB
Segment
PDB Comment
A0A023Z023subname: full=murein-dd-endopeptidase
{eco:0000313|embl:ahy71390.1};ec=3.4.-.-
{ eco:0000313|embl:ahy71390.1};
Escherichia coli,
Shigella flexneri, etc.
31311-297287221tvfA16-319crystal structure of
penicillin-binding protein
4 (pbp4) from staphylococcus
aureus
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31036-309274253mfdA29-295the structure of the
beta-lactamase superfamily
domain of d-alanyl-d-alanine
carboxypeptidase from
bacillus subtilis
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31044-10259333v39A47-104
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31035-276242281es5A3-258s216a mutant of streptomyces
k15 dd-transpeptidase
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31020-310291223humA25-351crystal structure of
penicillin binding protein
4 from staphylococcus
aureus col in complex
with cefotaxime
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31038-279242321xp4A27-291crystal structure of
a peptidoglycan synthesis
regulatory factor (pbp3)
from streptococcus pneumoniae
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31028-279252272bcfA30-281crystal structure of
a evolved putative penicillin-binding
protein homolog, rv2911,
from mycobacterium tuberculosis.
808967unnamed protein product,
partial
Escherichia coli1132-7978293itaC174-254crystal structure of
penicillin-binding protein
6 (pbp6) from e. coli
in acyl-enzyme complex
with ampicillin
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31038-307270251xp4A27-320crystal structure of
a peptidoglycan synthesis
regulatory factor (pbp3)
from streptococcus pneumoniae
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31032-276245283itaA5-254crystal structure of
penicillin-binding protein
6 (pbp6) from e. coli
in acyl-enzyme complex
with ampicillin
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31016-310295211tvfA18-351crystal structure of
penicillin-binding protein
4 (pbp4) from staphylococcus
aureus
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31019-272254261tvfA21-300crystal structure of
penicillin-binding protein
4 (pbp4) from staphylococcus
aureus
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31020-310291223humA25-351crystal structure of
penicillin binding protein
4 from staphylococcus
aureus col in complex
with cefotaxime
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31035-279245271es5A3-261s216a mutant of streptomyces
k15 dd-transpeptidase
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31035-276242271es2A3-258s96a mutant of streptomyces
k15 dd-transpeptidase
808967unnamed protein product,
partial
Escherichia coli1136-9792171tvfA232-319crystal structure of
penicillin-binding protein
4 (pbp4) from staphylococcus
aureus
A0A023Z023subname: full=murein-dd-endopeptidase
{eco:0000313|embl:ahy71390.1};ec=3.4.-.-
{ eco:0000313|embl:ahy71390.1};
Escherichia coli,
Shigella flexneri, etc.
31331-312282231nzoA5-295the crystal structure
of wild type penicillin-binding
protein 5 from e. coli
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31035-276242281es5A3-258s216a mutant of streptomyces
k15 dd-transpeptidase
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31035-310276233mfdB28-304the structure of the
beta-lactamase superfamily
domain of d-alanyl-d-alanine
carboxypeptidase from
bacillus subtilis
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31020-310291223humA25-351crystal structure of
penicillin binding protein
4 from staphylococcus
aureus col in complex
with cefotaxime
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31017-299283295fsrA4-325
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
3108-294287221tvfA16-319crystal structure of
penicillin-binding protein
4 (pbp4) from staphylococcus
aureus
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31038-279242321xp4A27-291crystal structure of
a peptidoglycan synthesis
regulatory factor (pbp3)
from streptococcus pneumoniae
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31038-309272281xp4D27-322crystal structure of
a peptidoglycan synthesis
regulatory factor (pbp3)
from streptococcus pneumoniae
A0A023Z023subname: full=murein-dd-endopeptidase
{eco:0000313|embl:ahy71390.1};ec=3.4.-.-
{ eco:0000313|embl:ahy71390.1};
Escherichia coli,
Shigella flexneri, etc.
31322-275254261tvfA21-300crystal structure of
penicillin-binding protein
4 (pbp4) from staphylococcus
aureus
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31037-243207333mfdA30-232the structure of the
beta-lactamase superfamily
domain of d-alanyl-d-alanine
carboxypeptidase from
bacillus subtilis
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31038-279242321xp4A27-291crystal structure of
a peptidoglycan synthesis
regulatory factor (pbp3)
from streptococcus pneumoniae
P0AFI6.2pbp7_shifl recname: full=d-alanyl-d-alanine
endopeptidase; short=dd-endopeptidas
e; altname: full=penicillin-binding
protein 7; short=pbp-7; flags:
precursor
Escherichia coli,
Escherichia fergusonii,
etc.
31035-279245271es5A3-261s216a mutant of streptomyces
k15 dd-transpeptidase