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ModBase: Database of Comparative Protein Structure Models

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TARGETMODEL DATATEMPLATE
Model
Icon 		Model/Fold
Reliability 		Sequence
Database
Link 		Database AnnotationOrganismProtein
Size		Modeled
Segment		SizeSeq
Id(%)		PDB
code		PDB
Segment		PDB Comment
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-382382332qjjA1-402crystal structure of
d-mannonate dehydratase
from novosphingobium
aromaticivorans
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38216-357342293my9A37-366crystal structure of
a muconate cycloisomerase
from azorhizobium caulinodans
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-368368252qdeA3-385crystal structure of
mandelate racemase/muconate
lactonizing family protein
from azoarcus sp. ebn1
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587181-565385222gshA14-401crystal structure of
l-rhamnonate dehydratase
from salmonella typhimurium
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38225-352328282hzgA37-366crystal stucture of
predicted mandelate
racemase from rhodobacter
sphaeroides
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-572367212oqyA1-374the crystal structure
of muconate cycloisomerase
from oceanobacillus
iheyensis
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-566361222oqhA3-366crystal structure of
an isomerase from streptomyces
coelicolor a3(2)
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-565360171tzzA1006-1387crystal structure of
the protein l1841, unknown
member of enolase superfamily
from bradyrhizobium
japonicum
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587205-565361302ox4A0-385crystal structure of
putative dehydratase
from zymomonas mobilis
zm4
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-360360272podA1-390crystal structure of
a member of enolase
superfamily from burkholderia
pseudomallei k96243
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3822-362361221mucA5-372structure of muconate
lactonizing enzyme at
1.85 angstroms resolution
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-376376202hzgA3-392crystal stucture of
predicted mandelate
racemase from rhodobacter
sphaeroides
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-368368253n4eA3-375crystal structure of
mandelate racemase/muconate
lactonizing protein
from paracoccus denitrificans
pd1222
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-354354293n4eA3-361crystal structure of
mandelate racemase/muconate
lactonizing protein
from paracoccus denitrificans
pd1222
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38218-361344293i6eA42-372crystal structure of
muconate lactonizing
enzyme from ruegeria
pomeroyi.
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-567362161wufA1001-1362crystal structure of
protein gi:16801725,
member of enolase superfamily
from listeria innocua
clip11262
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-360360292gl5A1-394crystal structure of
putative dehydratase
from salmonella thyphimurium
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-323323223r10A17-361
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-364364191tzzA1006-1391crystal structure of
the protein l1841, unknown
member of enolase superfamily
from bradyrhizobium
japonicum
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-350350252qddA1-353crystal structure of
a member of enolase
superfamily from roseovarius
nubinhibens ism
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3822-361360192pmqA2-364crystal structure of
a mandelate racemase/muconate
lactonizing enzyme from
roseovarius sp. htcc2601
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-362362302o56A2-393crystal structure of
a member of the enolase
superfamily from salmonella
typhimurium
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-360360293dfhA3-379crystal structure of
putative mandelate racemase
/ muconate lactonizing
enzyme from vibrionales
bacterium swat-3
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-370370222hzgA3-391crystal stucture of
predicted mandelate
racemase from rhodobacter
sphaeroides
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-565360303bsmA3-385crystal structure of
d-mannonate dehydratase
from chromohalobacter
salexigens
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38214-360347222gshA68-401crystal structure of
l-rhamnonate dehydratase
from salmonella typhimurium
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38218-361344293i6eA42-372crystal structure of
muconate lactonizing
enzyme from ruegeria
pomeroyi.
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38216-367352282oqyA24-374the crystal structure
of muconate cycloisomerase
from oceanobacillus
iheyensis
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-565360202mnr2-355mechanism of the reaction
catalyzed by mandelate
racemase. 2. crystal
structure of mandelate
racemase at 2.5 angstroms
resolution: identification
of the active site and
possible catalytic residues
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli58715-128114162oo6A221-337crystal structure of
putative l-alanine-dl-glutamate
epimerase from burkholderia
xenovorans strain lb400
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-354354282og9A13-369crystal structure of
mandelate racemase/muconate
lactonizing enzyme from
polaromonas sp. js666
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-581376181yeyA2-434crystal structure of
l-fuconate dehydratase
from xanthomonas campestris
pv. campestris str.
atcc 33913
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587207-575369243dipA3-400crystal structure of
an enolase protein from
the environmental genome
shotgun sequencing of
the sargasso sea
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-360360171tzzA1006-1387crystal structure of
the protein l1841, unknown
member of enolase superfamily
from bradyrhizobium
japonicum
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3822-354353273dipA3-384crystal structure of
an enolase protein from
the environmental genome
shotgun sequencing of
the sargasso sea
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587206-565360241rvkA1-3791.70 a crystal structure
of the hypothetical
protein mr.gi-17937161
from agrobacterium tumefaciens
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38218-374357173n4fA47-390crystal structure of
mandelate racemase/muconate
lactonizing protein
from geobacillus sp.
y412mc10
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-382382344e4fA1-404
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-367367202gdqA4-374crystal structure of
mandelate racemase/muconate
lactonizing enzyme from
bacillus subtilis at
1.8 a resolution
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38217-325309182oztA30-308crystal structure of
o-succinylbenzoate synthase
from thermosynechococcus
elongatus bp-1
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38214-362349272nqlA51-387crystal structure of
a member of the enolase
superfamily from agrobacterium
tumefaciens
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-362362253ct2A6-374crystal structure of
muconate cycloisomerase
from pseudomonas fluorescens
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38213-294282272pgeA31-331crystal structure of
menc from desulfotalea
psychrophila lsv54
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-357357232ps2A4-363crystal structure of
putative mandelate racemase/muconate
lactonizing enzyme from
aspergillus oryzae
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38214-363350292ppgA51-389crystal structure of
putative isomerase from
sinorhizobium meliloti
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli5878-206199191eunA16-213structure of 2-keto-3-deoxy-6-phosphogluconate
aldolase from escherichia
coli
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-382382833rr1A1-382
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		3821-323323223r11A17-361
Q6BF17galactonate dehydratase (ec
4.2.1.6)		Escherichia coli,
Escherichia fergusonii,
etc.		38245-258214281tzzA1084-1288crystal structure of
the protein l1841, unknown
member of enolase superfamily
from bradyrhizobium
japonicum
290541similar to p. putida sugar
metabolism enzymes		Escherichia coli587205-519315152oztA0-299crystal structure of
o-succinylbenzoate synthase
from thermosynechococcus
elongatus bp-1