| |
| TARGET | MODEL DATA | TEMPLATE |
|---|
Model
Icon | Model/Fold
Reliability | Sequence
Database
Link | Database Annotation | Organism | Protein
Size | Modeled
Segment | Size | Seq
Id(%) | PDB
code | PDB
Segment | PDB Comment |
|---|
 |  | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1609-1959 | 351 | 7 | 1edqA | 25-375 | crystal structure of
chitinase a from s.
marcescens at 1.55 angstroms |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1841-1960 | 120 | 12 | 2i13B | 21-144 | aart, a six finger zinc
finger designed to recognize
ann triplets |
 |  | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1418-1942 | 525 | 8 | 1dabA | 26-539 | the structure of bordetella
pertussis virulence
factor p.69 pertactin |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 11-1538 | 1528 | 57 | 3h0gA | 9-1495 | rna polymerase ii from
schizosaccharomyces
pombe |
 |  | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1616-1848 | 233 | 9 | 1edqA | 25-251 | crystal structure of
chitinase a from s.
marcescens at 1.55 angstroms |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1498-1907 | 410 | 9 | 1pamA | 275-683 | cyclodextrin glucanotransferase |
 |  | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1505-1675 | 171 | 19 | 1aolA | 29-207 | friend murine leukemia
virus receptor-binding
domain |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1566-1946 | 381 | 8 | 1jhnA | 63-457 | crystal structure of
the lumenal domain of
calnexin |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1600-1798 | 199 | 18 | 2ifrA | 2-204 | crystal structure of
scytalido-glutamic peptidase
with a peptide based
transition state analog |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1625-1782 | 158 | 15 | 1mv3A | 271-426 | nmr structure of the
tumor suppressor bin1:
alternative splicing
in melanoma and interaction
with c-myc |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 11-1478 | 1468 | 54 | 1twfA | 7-1448 | rna polymerase ii complexed
with utp at 2.3 a resolution |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1609-1963 | 355 | 6 | 1vsgA | 6-360 | 2.9 angstroms resolution
structure of the n-terminal
domain of a variant
surface glycoprotein
from trypanosoma brucei |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1521-1963 | 443 | 6 | 1ej6B | 241-686 | reovirus core |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1624-1797 | 174 | 11 | 2wstA | 119-287 | head domain of porcine
adenovirus type 4 nadc-1
isolate fibre |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 16-347 | 332 | 44 | 3qqcA | 67-408 | |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 18-1387 | 1370 | 19 | 1iw7D | 5-1500 | crystal structure of
the rna polymerase holoenzyme
from thermus thermophilus
at 2.6a resolution |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1589-1851 | 263 | 9 | 1cgt | 422-682 | structure of cyclodextrin
glycosyltransferase
refined at 2.0 angstroms
resolution |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1487-1950 | 464 | 7 | 1ej6B | 811-1274 | reovirus core |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 11-1479 | 1469 | 53 | 1i50A | 7-1449 | rna polymerase ii crystal
form ii at 2.8 a resolution |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1805-1963 | 159 | 11 | 1ciu | 507-666 | thermostable cgtase
from thermoanaerobacterium
thermosulfurigenes em1
at ph 8.0. |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1619-1780 | 162 | 18 | 2fz1A | 27-188 | structure of empty head
turnip yellow mosaic
virus (atc) at 100 k |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1639-1829 | 191 | 17 | 1ddlA | 2-188 | desmodium yellow mottle
tymovirus |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1609-1963 | 355 | 6 | 1vsgA | 6-360 | 2.9 angstroms resolution
structure of the n-terminal
domain of a variant
surface glycoprotein
from trypanosoma brucei |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1562-1959 | 398 | 7 | 1l3wA | 4-401 | c-cadherin ectodomain |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1485-1680 | 196 | 11 | 1aolA | 9-207 | friend murine leukemia
virus receptor-binding
domain |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1805-1963 | 159 | 11 | 1ciu | 507-666 | thermostable cgtase
from thermoanaerobacterium
thermosulfurigenes em1
at ph 8.0. |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1371-1967 | 597 | 9 | 1rwhA | 152-747 | crystal structure of
arthrobacter aurescens
chondroitin ac lyase
in complex with chondroitin
tetrasaccharide |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1558-1963 | 406 | 6 | 1qsaA | 71-476 | crystal structure of
the 70 kda soluble lytic
transglycosylase slt70
from escherichia coli
at 1.65 angstroms resolution |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1516-1970 | 455 | 10 | 1xf1A | 545-1003 | structure of c5a peptidase-
a key virulence factor
from streptococcus |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1618-1808 | 191 | 13 | 2fz1B | 3-188 | structure of empty head
turnip yellow mosaic
virus (atc) at 100 k |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1487-1950 | 464 | 7 | 1ej6B | 811-1274 | reovirus core |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 11-1478 | 1468 | 54 | 1twfA | 7-1448 | rna polymerase ii complexed
with utp at 2.3 a resolution |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1562-1959 | 398 | 7 | 1l3wA | 4-401 | c-cadherin ectodomain |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1648-1967 | 320 | 9 | 1r6vA | 308-626 | crystal structure of
fervidolysin from fervidobacterium
pennivorans, a keratinolytic
enzyme related to subtilisin |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1566-1946 | 381 | 8 | 1jhnA | 63-457 | crystal structure of
the lumenal domain of
calnexin |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 11-1475 | 1465 | 55 | 1i6hA | 7-1445 | rna polymerase ii elongation
complex |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1578-1851 | 274 | 12 | 1uyjA | 18-293 | clostridium perfringens
epsilon toxin shows
structural similarity
with the pore forming
toxin aerolysin |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 14-351 | 338 | 41 | 3qqcA | 63-412 | |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 11-1478 | 1468 | 54 | 1k83A | 7-1448 | crystal structure of
yeast rna polymerase
ii complexed with the
inhibitor alpha amanitin |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 1609-1959 | 351 | 7 | 1edqA | 25-375 | crystal structure of
chitinase a from s.
marcescens at 1.55 angstroms |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 11-1538 | 1528 | 57 | 3h0gA | 9-1495 | rna polymerase ii from
schizosaccharomyces
pombe |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1589-1851 | 263 | 9 | 1cgt | 422-682 | structure of cyclodextrin
glycosyltransferase
refined at 2.0 angstroms
resolution |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1498-1907 | 410 | 9 | 1pamA | 275-683 | cyclodextrin glucanotransferase |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1495-1964 | 470 | 7 | 1ot5A | 127-598 | the 2.4 angstrom crystal
sructure of kex2 in
complex with a peptidyl-boronic
acid inhibitor |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 11-1474 | 1464 | 54 | 2nvqA | 7-1444 | rna polymerase ii elongation
complex in 150 mm mg+2
with 2'dutp |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1609-1963 | 355 | 6 | 1vsgA | 6-360 | 2.9 angstroms resolution
structure of the n-terminal
domain of a variant
surface glycoprotein
from trypanosoma brucei |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1604-1845 | 242 | 8 | 1d3cA | 444-684 | michaelis complex of
bacillus circulans strain
251 cyclodextrin glycosyltransferase
with gamma-cyclodextrin |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 16-918 | 903 | 46 | 2pmzA | 4-874 | archaeal rna polymerase
from sulfolobus solfataricus |
 | | P24928 | recname: full=dna-directed
rna polymerase ii subunit
rpb1;short=rna polymerase
i i subunit b1;ec=2.7.7.6;altname:
full=dna-directed rna polymerase
ii subunit a;altname: full=dna-directed
rna polymerase | Callithrix jacchus,
Cebus apella, etc. | 1970 | 11-1538 | 1528 | 57 | 3h0gA | 9-1495 | rna polymerase ii from
schizosaccharomyces
pombe |
 | | P24928.2 | rpb1_human recname: full=dna-directed
rna polymerase ii subunit
rpb1; short=rna polymerase
ii subunit b1; altname: full=dna-directed
rna polymerase ii subunit
a; altname: full=dna-directed
rna polymer | Homo sapiens | 1970 | 1566-1946 | 381 | 8 | 1jhnA | 63-457 | crystal structure of
the lumenal domain of
calnexin |
