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ModBase: Database of Comparative Protein Structure Models

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TARGETMODEL DATATEMPLATE
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Reliability
Sequence
Database
Link
Database AnnotationOrganismProtein
Size
Modeled
Segment
SizeSeq
Id(%)
PDB
code
PDB
Segment
PDB Comment
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-421408141e9zB70-475crystal structure of
helicobacter pylori
urease
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-424417152oodA21-455crystal structure of
guanine deaminase from
bradyrhizobium japonicum
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42729-34231481hzyA36-329high resolution structure
of the zinc-containing
phosphotriesterase from
pseudomonas diminuta
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-402395152i9uA13-412crystal structure of
guanine deaminase from
c. acetobutylicum with
bound guanine in the
active site
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43056-383328121j79A7-323molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-406398101un7A7-388
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42725-375351131krmA25-345crystal structure of
bovine adenosine deaminase
complexed with 6-hydroxyl-1,6-dihydropurine
riboside
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-418417171a5lC60-464k217c variant of klebsiella
aerogenes urease
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-4274191001ra0A8-426bacterial cytosine deaminase
d314g mutant bound to
5-fluoro-4-(s)-hydroxy-3,4-dihydropyrimidine.
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-407399121ymyA4-381crystal structure of
the n-acetylglucosamine-6-phosphate
deacetylase from escherichia
coli k12
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-409398282qt3A9-396crystal structure of
n-isopropylammelide
isopropylaminohydrolase
atzc from pseudomonas
sp. strain adp complexed
with zn
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42753-380328121j79A7-323molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-404397141nfgA5-434structure of d-hydantoinase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397141nfgA5-434structure of d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
4324-430427162oodA13-455crystal structure of
guanine deaminase from
bradyrhizobium japonicum
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-410397132oofA9-405the crystal structure
of 4-imidazolone-5-propanoate
amidohydrolase from
environmental sample
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-413400172r8cA6-412crystal structure of
uncharacterized protein
eaj56179
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397131rk6A12-463the enzyme in complex
with 50mm cdcl2
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43226-421396151p1mA19-389structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4277-425419151gkpA3-459d-hydantoinase (dihydropyrimidinase)
from thermus sp. in
space group c2221
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43212-428417121kcxA17-471x-ray structure of nysgrc
target t-45
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-409401143ooqA9-389
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43231-417387131e9zB105-463crystal structure of
helicobacter pylori
urease
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43228-389362162i9uA34-392crystal structure of
guanine deaminase from
c. acetobutylicum with
bound guanine in the
active site
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397151nfgA5-434structure of d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-412399131kcxA19-441x-ray structure of nysgrc
target t-45
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42747-38433893ovgA13-349
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4303-413411141e9zB61-461crystal structure of
helicobacter pylori
urease
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-406398162puzA21-420crystal structure of
imidazolonepropionase
from agrobacterium tumefaciens
with bound product n-formimino-l-glutamate
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42726-412387121e9yB105-463crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-411404141fweC70-461klebsiella aerogenes
urease, c319a variant
with acetohydroxamic
acid (aha) bound
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42747-366320101i0bA40-362high resolution structure
of the manganese-containing
phosphotriesterase from
pseudomonas diminuta
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42628-34131481hzyA36-329high resolution structure
of the zinc-containing
phosphotriesterase from
pseudomonas diminuta
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412121ejwC1062-1461crystal structure of
wild-type klebsiella
aerogenes urease at
298k
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398162puzA21-420crystal structure of
imidazolonepropionase
from agrobacterium tumefaciens
with bound product n-formimino-l-glutamate
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397151p1mA3-378structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43228-373346223h4uA54-400
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397131rk6A12-463the enzyme in complex
with 50mm cdcl2
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
4321-428428141k1dA1-455crystal structure of
d-hydantoinase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-427427162pajA13-473crystal structure of
an amidohydrolase from
an environmental sample
of sargasso sea
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42622-36334291a4mA20-335ada structure complexed
with purine riboside
at ph 7.0
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-403395152i9uA13-412crystal structure of
guanine deaminase from
c. acetobutylicum with
bound guanine in the
active site
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43228-411384122gokA44-420crystal structure of
the imidazolonepropionase
from agrobacterium tumefaciens
at 1.87 a resolution
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43226-369344121a4mA24-335ada structure complexed
with purine riboside
at ph 7.0
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42646-365320101i0bA40-362high resolution structure
of the manganese-containing
phosphotriesterase from
pseudomonas diminuta
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412124ubpC63-464structure of bacillus
pasteurii urease inhibited
with acetohydroxamic
acid at 1.55 a resolution
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397151gkpA5-436d-hydantoinase (dihydropyrimidinase)
from thermus sp. in
space group c2221
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42725-366342131w1iE28-337crystal structure of
dipeptidyl peptidase
iv (dppiv or cd26) in
complex with adenosine
deaminase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42723-416394133ubpC87-468diamidophosphate inhibited
bacillus pasteurii urease
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42628-34131481i0dA36-329high resolution structure
of the zinc/cadmium-containing
phosphotriesterase from
pseudomonas diminuta