ModBase General Information
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Recent publication:
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Ursula Pieper, Narayanan Eswar, Hannes Braberg, M.S. Madhusudhan, Fred Davis, Ashley C. Stuart,
Nebojsa Mirkovic, Andrea Rossi,
Marc A. Marti-Renom, Andras Fiser, Ben Webb, Daniel Greenblatt,
Conrad Huang, Tom Ferrin, Andrej Sali
Nucleic Acids Research 32, D217-D222, 2004 |
MODBASE is a queryable database of annotated protein structure models. The models are derived by
ModPipe, an automated modeling pipeline relying on the programs PSI-BLAST and MODELLER.
The database also includes fold assignments and alignments on which the models were based.
MODBASE contains theoretically calculated models, which may contain significant errors, not
experimentally determined structures. Thus, special care is taken to assess the quality of the models. |
Additionally to the protein structure models, MODBASE contains information about putative ligand binding sites,
SNP annotation, and protein-protein interactions.
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| For specific information, please consult the documentation. |
