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ModBase: Database of Comparative Protein Structure Models

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TARGETMODEL DATATEMPLATE
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Sequence
Database
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Database AnnotationOrganismProtein
Size
Modeled
Segment
SizeSeq
Id(%)
PDB
code
PDB
Segment
PDB Comment
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42725-364340141w1iE28-335crystal structure of
dipeptidyl peptidase
iv (dppiv or cd26) in
complex with adenosine
deaminase
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-415414141ejxC1060-1461crystal structure of
wild-type klebsiella
aerogenes urease at
100k
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-410409141onwA2-384crystal structure of
isoaspartyl dipeptidase
from e. coli
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397141k1dA5-437crystal structure of
d-hydantoinase
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398141po9A12-383crytsal structure of
isoaspartyl dipeptidase
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398151gkrA6-434l-hydantoinase (dihydropyrimidinase)
from arthrobacter aurescens
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43025-367343121a4mA25-335ada structure complexed
with purine riboside
at ph 7.0
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-409408141po9A2-383crytsal structure of
isoaspartyl dipeptidase
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-404397132oofA9-405the crystal structure
of 4-imidazolone-5-propanoate
amidohydrolase from
environmental sample
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412124ubpC63-464structure of bacillus
pasteurii urease inhibited
with acetohydroxamic
acid at 1.55 a resolution
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42723-406384122gokA44-420crystal structure of
the imidazolonepropionase
from agrobacterium tumefaciens
at 1.87 a resolution
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42625-411387131e9zB105-463crystal structure of
helicobacter pylori
urease
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
4323-431429151e9yB67-476crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397161p1mA3-378structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-421408141ejxC1070-1465crystal structure of
wild-type klebsiella
aerogenes urease at
100k
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43026-409384122gokA44-420crystal structure of
the imidazolonepropionase
from agrobacterium tumefaciens
at 1.87 a resolution
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412131ejwC1062-1461crystal structure of
wild-type klebsiella
aerogenes urease at
298k
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4301-419419143ubpC59-468diamidophosphate inhibited
bacillus pasteurii urease
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43212-417406111un7A5-394
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43029-415387121e9yB105-463crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-411404131ejwC1070-1461crystal structure of
wild-type klebsiella
aerogenes urease at
298k
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397151gkpA5-436d-hydantoinase (dihydropyrimidinase)
from thermus sp. in
space group c2221
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-415407131nfgA5-429structure of d-hydantoinase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-4274191001K6WA8-426the structure of escherichia
coli cytosine deaminase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4277-404398152qs8A8-409crystal structure of
a xaa-pro dipeptidase
with bound methionine
in the active site
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42652-403352141j79A7-345molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43026-383358131o12A9-344crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4275-4274231001k6wA4-426the structure of escherichia
coli cytosine deaminase
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42625-411387121e9yB105-463crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-407399181p1mA3-380structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43230-381352131ndwA28-349crystal structure of
adenosine deaminase
complexed with fr221647
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398121o12A3-361crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-404397134ubpC71-473structure of bacillus
pasteurii urease inhibited
with acetohydroxamic
acid at 1.55 a resolution
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43026-36734291a4mA20-335ada structure complexed
with purine riboside
at ph 7.0
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-410403141onxA12-388crystal structure of
isoaspartyl dipeptidase
from escherichia coli
complexed with aspartate
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-411411141onxA4-388crystal structure of
isoaspartyl dipeptidase
from escherichia coli
complexed with aspartate
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-404397151p1mA3-378structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4262-405404172pajA15-454crystal structure of
an amidohydrolase from
an environmental sample
of sargasso sea
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-406398131onwA12-383crystal structure of
isoaspartyl dipeptidase
from e. coli
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412131ejxC1062-1461crystal structure of
wild-type klebsiella
aerogenes urease at
100k
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-406399141onwA12-384crystal structure of
isoaspartyl dipeptidase
from e. coli
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43010-408399131j6pA-1-378crystal structure of
metal-dependent hydrolase
of cytosinedemaniase/chlorohydrolase
family (tm0936) from
thermotoga maritima
at 1.9 a resolution
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-412399181p1mA3-380structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-415408141e9yB70-467crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42624-375352131ndwA28-349crystal structure of
adenosine deaminase
complexed with fr221647
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398151gkrA6-434l-hydantoinase (dihydropyrimidinase)
from arthrobacter aurescens
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397151nfgA5-434structure of d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398282qt3A9-396crystal structure of
n-isopropylammelide
isopropylaminohydrolase
atzc from pseudomonas
sp. strain adp complexed
with zn
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4274-414411131gkrA1-442l-hydantoinase (dihydropyrimidinase)
from arthrobacter aurescens
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42646-36331891pta40-360three-dimensional structure
of phosphotriesterase:
an enzyme capable of
detoxifying organophosphate
nerve agents