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ModBase: Database of Comparative Protein Structure Models

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TARGETMODEL DATATEMPLATE
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Sequence
Database
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Database AnnotationOrganismProtein
Size
Modeled
Segment
SizeSeq
Id(%)
PDB
code
PDB
Segment
PDB Comment
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-383375103hm7A8-396crystal structure of
allantoinase from bacillus
halodurans c-125
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398121UN7A7-388
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4272-426425151e9yB63-476crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4276-422417121kcxA16-474x-ray structure of nysgrc
target t-45
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43258-385328121j79A4-319molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-4264191001ra0A8-426bacterial cytosine deaminase
d314g mutant bound to
5-fluoro-4-(s)-hydroxy-3,4-dihydropyrimidine.
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42652-379328121j79A7-323molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398141po9A12-383crytsal structure of
isoaspartyl dipeptidase
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-415414131ejxA1060-1461crystal structure of
wild-type klebsiella
aerogenes urease at
100k
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-414413141ejrC1060-1460crystal structure of
the d221a variant of
klebsiella aerogenes
urease
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-415415171a5lC62-464k217c variant of klebsiella
aerogenes urease
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-411404141ejrC1070-1461crystal structure of
the d221a variant of
klebsiella aerogenes
urease
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43028-379352131ndwA28-349crystal structure of
adenosine deaminase
complexed with fr221647
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42652-379328131j79B4-315molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43258-385328121j79A7-323molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397141nfgA5-434structure of d-hydantoinase
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-419408141e9zB70-475crystal structure of
helicobacter pylori
urease
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4275-415411141nfgA1-444structure of d-hydantoinase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412131ejxA1062-1461crystal structure of
wild-type klebsiella
aerogenes urease at
100k
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-406398121UN7A7-388
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397152icsA9-369crystal structure of
an adenine deaminase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-406398151gkrA6-434l-hydantoinase (dihydropyrimidinase)
from arthrobacter aurescens
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397151p1mA3-378structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-405397141k1dA5-437crystal structure of
d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-416403141onwA12-388crystal structure of
isoaspartyl dipeptidase
from e. coli
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-418407131nfgA5-429structure of d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43230-371342131w1iE28-337crystal structure of
dipeptidyl peptidase
iv (dppiv or cd26) in
complex with adenosine
deaminase
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-411404131a5nC70-461k217a variant of klebsiella
aerogenes urease, chemically
rescued by formate and
nickel
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-4274191001ra0A8-426bacterial cytosine deaminase
d314g mutant bound to
5-fluoro-4-(s)-hydroxy-3,4-dihydropyrimidine.
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43032-34531481hzyA36-329high resolution structure
of the zinc-containing
phosphotriesterase from
pseudomonas diminuta
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43032-34531481i0dA36-329high resolution structure
of the zinc/cadmium-containing
phosphotriesterase from
pseudomonas diminuta
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43258-385328131j79B4-315molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
4323-423421121rk6A9-476the enzyme in complex
with 50mm cdcl2
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42622-379358131o12A9-344crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42624-363340141w1iE28-335crystal structure of
dipeptidyl peptidase
iv (dppiv or cd26) in
complex with adenosine
deaminase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4277-410404161p1mA1-383structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42723-36434291a4mA20-335ada structure complexed
with purine riboside
at ph 7.0
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-410397151nfgA5-434structure of d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43228-421394133ubpC87-468diamidophosphate inhibited
bacillus pasteurii urease
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42646-363318111pta5-316three-dimensional structure
of phosphotriesterase:
an enzyme capable of
detoxifying organophosphate
nerve agents
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
4329-410402142q09A4-405crystal structure of
imidazolonepropionase
from environmental sample
with bound inhibitor
3-(2,5-dioxo-imidazolidin-4-yl)-propionic
acid
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-406398121o12A3-361crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42655-359305131bf6A8-289phosphotriesterase homology
protein from escherichia
coli
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-412399121ymyA4-381crystal structure of
the n-acetylglucosamine-6-phosphate
deacetylase from escherichia
coli k12
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4274-418415121rk6A7-476the enzyme in complex
with 50mm cdcl2
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4275-4274231001ra0A4-426bacterial cytosine deaminase
d314g mutant bound to
5-fluoro-4-(s)-hydroxy-3,4-dihydropyrimidine.
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli42617-377361121a4mA25-348ada structure complexed
with purine riboside
at ph 7.0
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-408395152i9uA13-412crystal structure of
guanine deaminase from
c. acetobutylicum with
bound guanine in the
active site
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398101un7A7-388
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42753-404352141j79A7-345molecular structure
of dihydroorotase: a
paradigm for catalysis
through the use of a
binuclear metal center