Comparative Protein Structure Modeling with NYSGXRC Structures
NYSGXRC Crystal Structures ModBase NYSGXRC Model Data
Index PDB code Target ID Database Accession Number Annotation Total Sequences Modeling Date Acceptable Models/Fold assignments
Minimum Sequence Identity
Maximum Sequence Identity
# Models >50% Seq. ID # Models 30-50% Seq. ID # Models <30% Seq. ID
1 2oux 10001b 29344617 Magnesium transporter 5602 2007-04-01 1715
(2483)		 2356
(2511)		 551
(724)		 9 6 8 61 21 30 7 144 4471
2 2ioj 10007g 6686150 Hypothetical protein AF1212 374 2006-11-19 272
(273)		 0
(0)		 48
(101)		 15 - 14 48 - 32 0 66 254
3 2p61 10015b 15644394 Hypothetical protein 68 2007-04-01 53
(53)		 1
(1)		 14
(14)		 20 19 17 96 19 30 2 10 56
4 2qup 10015d 15614041 BH1478 protein. 86 2007-10-28 67
(67)		 1
(1)		 18
(18)		 18 33 18 62 33 32 4 28 54
5 2iqi 10022f 21111635 Hypothetical protein XCC0632 298 2006-11-19 234
(234)		 61
(63)		 2
(2)		 11 9 16 91 26 19 7 12 278
6 2ns9 10024b 5105925 Hypothetical protein APE2225 1673 2006-11-28 497
(497)		 1126
(1127)		 53
(53)		 8 6 9 33 22 27 0 3 1673
7 2pcs 10024h 56410457 Hypothetical conserved protein 1873 2007-04-11 529
(529)		 1273
(1276)		 68
(68)		 8 5 10 97 21 22 1 55 1814
8 3dtd 10036a 49474979 Invasion-associated protein B. Calculation in Progress 0
(0)		 0
()		 0
()		 - - - - - - 0 0 0
9 3by5 10037i 15890044 Cobalamin biosynthesis protein (AGR_C_5076p). 369 2008-03-21 20
(20)		 0
(0)		 345
(349)		 27 - 17 98 - 45 1 194 170
10 2pw9 10038i 51245629 Related to formate dehydrogenase accessory protein 489 2007-07-16 476
(479)		 3
(5)		 0
(5)		 20 20 - 34 25 - 0 129 350
11 3df7 10040d n/a Putative uncharacterized protein STY3980 (Putative uncharacterizedprotein). Calculation in Progress 0
(0)		 0
()		 0
()		 - - - - - - 0 0 0
12 2oo3 10044e 53754026 Hypothetical protein 259 2007-03-28 251
(254)		 0
(1)		 2
(4)		 25 - 21 98 - 22 1 243 9
13 2qah 10053d 3738249 2-pyrone-4,6-dicarboxylic acid hydrolase (2-pyrone-4,6-dicarbaxylateDE hydrolase) 2526 2007-07-13 839
(844)		 1636
(1653)		 26
(29)		 9 5 10 83 21 16 32 61 2408
14 2qhy 10054e 15644674 Mannose-6-phosphate isomerase (Pmi) or (AlgA). 2669 2008-07-11 2669
(2669)		 0
(0)		 0
(0)		 90 - - 98 - - 2669 0 0
15 2qh5 10054e 15644674 Mannose-6-phosphate isomerase (Pmi) or (AlgA). 3489 2007-09-24 1539
(1541)		 1940
(1947)		 1
(1)		 9 8 18 97 27 18 5 463 3012
16 2ijq 10060g 55230583 Hypothetical protein 119 2006-11-18 106
(108)		 4
(4)		 4
(7)		 11 13 12 74 19 23 3 0 111
17 2iml 10069c 11499421 Hypothetical protein 43 2006-11-19 36
(36)		 3
(3)		 2
(4)		 19 17 24 39 24 26 0 15 26
18 2nr4 10069f 21227955 Conserved protein 1084 2006-11-19 258
(258)		 817
(824)		 2
(2)		 9 6 21 94 19 23 3 8 1066
19 3b5m 10069h 32444056 Putative uncharacterized protein. 1517 2007-12-13 99
(99)		 1403
(1414)		 4
(5)		 9 4 14 45 33 20 0 20 1486
20 2ptf 10069i 15678883 Hypothetical protein MTH_863 1424 2007-07-16 136
(136)		 1264
(1282)		 6
(6)		 10 6 13 98 26 20 2 10 1394
21 3c19 10070i 20093733 Uncharacterized conserved protein. 184 2008-03-21 179
(179)		 2
(3)		 0
(2)		 16 17 - 35 19 - 0 35 146
22 3c6f 10076b 2633027 YetF protein. 474 2008-03-21 323
(463)		 2
(5)		 2
(8)		 16 19 15 97 22 16 13 155 159
23 2pzz 10077a 15669759 UPF0201 protein MJ1564 87 2007-07-16 79
(79)		 3
(3)		 3
(5)		 16 16 16 98 18 16 6 30 49
24 2nwu 10077b 13814226 UPF0201 protein SSO1042 54 2007-03-17 35
(35)		 0
(0)		 19
(19)		 25 - 18 95 - 31 4 31 19
25 2nrq 10077c 13813909 Hypothetical protein ORF-c20_032 32 2006-11-30 29
(29)		 0
(0)		 3
(3)		 18 - 17 97 - 18 1 5 26
26 2ogk 10077d 11499899 Hypothetical protein 71 2007-03-05 67
(67)		 2
(2)		 2
(2)		 19 14 22 39 25 30 0 24 47
27 3c9g 10077e 21264134 UPF0200/UPF0201 protein AF_1395. 2080 2008-03-22 1135
(1170)		 582
(906)		 0
(15)		 9 5 - 94 17 - 6 36 1675
28 3bt5 10080d 15806119 Putative uncharacterized protein. 562 2008-03-21 328
(332)		 209
(214)		 18
(19)		 9 6 10 42 31 27 0 94 464
29 2qf9 10080f 32141163 Putative secreted protein 429 2007-07-19 155
(189)		 74
(101)		 142
(150)		 14 11 9 81 27 24 6 81 284
30 2i6e 10093b 6458048 conserved hypothetical protein 2298 2006-09-26 432
(432)		 1788
(1851)		 15
(15)		 8 5 10 85 20 24 3 3 2229
31 2pbe 10093e 11498001 Hypothetical protein 70 2007-04-11 66
(69)		 0
(0)		 1
(1)		 20 - 18 98 - 18 16 46 5
32 2nxo 10093f 21222891 Hypothetical protein SCO4506 2325 2007-03-16 1133
(1133)		 1162
(1171)		 18
(21)		 8 7 14 97 18 22 9 8 2296
33 3b89 10094b 34014595 16S rRNA methylase. 4721 2007-12-13 316
(347)		 3974
(4359)		 44
(47)		 11 7 11 97 26 31 3 9 4322
34 2qy6 10095a 38704075 UPF0209 protein yfcK 1631 2007-09-25 500
(506)		 1012
(1056)		 32
(69)		 10 7 12 98 25 25 113 158 1273
35 2nly 10097c 10174109 BH1492 protein 249 2006-11-19 193
(195)		 1
(1)		 32
(53)		 16 16 15 50 16 24 0 67 159
36 2qv5 10097f 15890022 Putative uncharacterized protein Atu2773 (AGR_C_5032p). 277 2007-10-28 244
(247)		 0
(0)		 11
(30)		 14 - 14 75 - 23 9 28 218
37 2r1f 10099a 82777290 Putative thymidylate kinase (EC 2.7.4.9). 605 2007-10-05 591
(596)		 1
(1)		 3
(8)		 21 22 20 91 22 21 38 384 173
38 2p5z 10105b 26249228 Hypothetical protein 947 2007-04-04 623
(637)		 249
(296)		 0
(14)		 12 10 - 95 29 - 28 23 821
39 2pju 10108a 16128315 DNA-binding transcriptional regulator 164 2007-05-25 102
(102)		 1
(1)		 21
(61)		 15 17 14 98 17 23 10 47 67
40 2q5c 10108c 15893750 NtrC family transcriptional regulator (PAS and AAA domains) 237 2007-07-17 115
(115)		 0
(0)		 40
(125)		 17 - 12 28 - 27 0 0 155
41 3czb 10110d 16127970 Transglycosylase, putative. 649 2008-07-11 363
(411)		 82
(229)		 2
(11)		 15 14 21 73 29 27 1 220 226
42 2pnw 10110g 15887368 AGR_C_15p 473 2007-05-21 293
(315)		 9
(155)		 2
(5)		 13 16 13 67 17 18 9 183 112
43 3bqs 10114f 47092365 Putative uncharacterized protein. 659 2008-03-21 233
(235)		 5
(5)		 199
(419)		 15 18 12 98 29 34 13 94 330
44 2nyg 10116c 9630129 YokD protein 114 2007-03-16 95
(99)		 1
(10)		 0
(5)		 18 15 - 56 15 - 11 54 31
45 3djc 10117d 52841146 Bvg accessory factor Calculation in Progress 0
(0)		 0
()		 0
()		 - - - - - - 0 0 0
46 2nrh 10117e 57166253 Transcriptional activator, putative, Baf family 337 2006-11-28 213
(213)		 123
(124)		 0
(0)		 19 18 - 97 29 - 11 7 318
47 2qsr 10118d 15902050 Transcription-repair coupling factor. 737 2007-10-01 723
(725)		 2
(2)		 9
(10)		 10 14 13 72 16 20 26 45 663
48 2imh 10119g 56679139 Hypothetical protein 83 2006-11-19 76
(77)		 0
(0)		 1
(7)		 23 - 34 53 - 34 2 62 13
49 2nrj 10120c 2507017 Hemolysin BL-binding component precursor (Enterotoxin 40 kDa subunit) 1444 2006-11-28 79
(82)		 1316
(1339)		 18
(25)		 11 6 8 98 17 19 26 0 1387
50 3d5l 10123k n/a Putative uncharacterized protein STY3980 (Putative uncharacterizedprotein). 665 2008-07-11 601
(609)		 9
(13)		 17
(127)		 14 12 11 97 23 25 3 96 528
51 2oyn 10141a 15668227 Hypothetical protein MJ0056 44 2007-03-13 44
(44)		 0
(0)		 0
(0)		 22 - - 53 - - 2 35 7
52 3cta 10141b 16082091 Putative uncharacterized protein Ta1064. 3352 2008-07-11 0
(1)		 3035
(3042)		 57
(310)		 - 6 16 - 23 79 2 14 3076
53 2rjz 10146c n/a 338 2007-12-08 211
(211)		 100
(100)		 27
(27)		 10 9 11 98 23 25 32 95 211
54 2pbe 10154a 16079732 Aminoglycoside 6-adenylyltransferase (EC 2.7.7.-) (AAD(6)). Calculation in Progress 0
(0)		 0
(0)		 0
(0)		 - - - - - - 0 0 0
55 2p67 10158a 16130819 Membrane ATPase/protein kinase 3247 2007-04-05 443
(446)		 2770
(2788)		 56
(70)		 11 9 14 92 22 25 16 180 3073
56 3bma 10162c 15459681 D-alanine transfer from undecaprenol-phosphate to thepoly(Glycerophosphate) chain. 97 2008-01-29 91
(96)		 0
(1)		 0
(0)		 16 - - 64 - - 11 37 43
57 2ogf 10163a 2495963 Hypothetical protein MJ0408 31 2007-03-21 27
(28)		 0
(1)		 1
(2)		 35 - 24 98 - 24 4 23 1
58 2iec 10163b 19887251 Uncharacterized protein conserved in archaea 24 2006-11-18 22
(22)		 2
(2)		 0
(0)		 28 33 - 45 38 - 0 23 1
59 2i52 10163d 48429938 Hypothetical protein 23 2006-09-26 21
(21)		 2
(2)		 0
(0)		 32 34 - 49 42 - 0 23 0
60 2if6 10166a 15834120 Hypothetical protein ECs4866 602 2006-11-18 125
(173)		 106
(359)		 11
(71)		 15 12 18 98 28 27 4 10 228
61 2nwi 10167c 11498992 Hypothetical protein 1554 2007-03-16 830
(832)		 700
(702)		 20
(20)		 10 6 10 49 24 29 0 13 1537
62 2qya 10169d 20094404 Uncharacterized conserved protein. 37 2007-09-25 37
(37)		 0
(0)		 0
(0)		 19 - - 98 - - 1 9 27
63 2ohw 10171a 2635672 YueI protein 60 2007-03-21 54
(54)		 0
(0)		 1
(6)		 21 - 23 61 - 23 2 27 26
64 2ipq 10172b 16763127 Hypothetical protein 66 2006-11-19 60
(60)		 5
(5)		 0
(1)		 19 20 - 44 30 - 0 18 47
65 3c4r 10179a 26247280 Putative uncharacterized protein. 89 2008-03-21 82
(83)		 3
(3)		 0
(3)		 16 22 - 98 35 - 28 44 13
66 2pbz 10188d 57158690 Hypothetical protein 2951 2007-04-11 901
(903)		 2097
(2156)		 1
(2)		 9 6 14 43 20 14 0 53 2946
67 3but 10193b 11498058 Putative uncharacterized protein. 211 2008-03-21 16
(16)		 167
(195)		 0
(0)		 14 7 - 98 21 - 2 3 178
68 2ia1 10195b 10176327 BH3703 protein 65 2006-11-19 53
(53)		 1
(2)		 4
(10)		 25 24 22 32 24 26 0 4 54
69 2qyx 10196a 15668331 Uncharacterized protein MJ0159 36 2007-10-03 36
(36)		 0
(0)		 0
(0)		 23 - - 53 - - 2 25 9
70 3bpd 10197b 11499144 Putative uncharacterized protein. 51 2008-03-21 43
(43)		 1
(2)		 6
(6)		 33 32 28 97 32 33 21 28 1
71 2oo2 10200c 11499371 Hypothetical protein 49 2007-03-27 38
(38)		 7
(7)		 4
(4)		 17 13 14 66 33 32 1 9 42
72 2pmr 10200d 15679684 Hypothetical protein 55 2007-05-21 42
(42)		 7
(7)		 7
(7)		 19 16 20 47 25 32 0 22 34
73 2p2u 10201b 46448964 Host-nuclease inhibitor protein Gam, putative 31 2007-04-01 10
(10)		 20
(20)		 1
(1)		 25 19 22 53 29 22 1 2 28
74 3be3 10206d 33591664 Putative uncharacterized protein. 115 2007-12-13 97
(97)		 18
(18)		 0
(0)		 28 22 - 80 39 - 1 107 7
75 2qsd 10217c 56460687 Uncharacterized conserved protein. 48 2007-10-01 48
(48)		 0
(0)		 0
(0)		 29 - - 64 - - 2 45 1
76 2im9 10224b 53753387 Hypothetical protein 56 2006-11-19 50
(50)		 0
(1)		 0
(5)		 23 - - 37 - - 0 26 24
77 2p1g 10224c 53713325 Putative xylanase 78 2007-04-01 58
(58)		 3
(5)		 0
(15)		 19 22 -