Home
Home
Structure Similarity pdbe.org/fold
Bringing Structure to Biology
wwPDB EMDB
 

 
Structure Alignment Results help  
 
Query: pdb entry 3rot, chain   : 273 residues.  
CRYSTAL STRUCTURE OF ABC SUGAR TRANSPORTER (PERIPLASMIC SUGAR BINDING PROTEIN) FROM LEGIONELLA PNEUMOPHILA 
Examined 76952 entries (192118 chains),
Matches 1-20 of 284. 		  
resort results  
 ##   Scoring  help  Rmsd  Nalgn Ng %seq Query Target (PDB entry)
 Q   P   Z  %sse Match %sse Nres × Title
1 1.00 83.8 27.6 0.00 273 0 100 100 3rot:A 100 273 CRYSTAL STRUCTURE OF ABC SUGAR TRANSPORTER (PERIPLASMIC SUGAR BINDING PROTEIN) FROM LEGIONELLA PNEUMOPHILA
2 0.98 55.6 22.4 0.36 272 0 100 100 3rot:B 100 272 CRYSTAL STRUCTURE OF ABC SUGAR TRANSPORTER (PERIPLASMIC SUGAR BINDING PROTEIN) FROM LEGIONELLA PNEUMOPHILA
3 0.64 19.6 13.3 1.88 258 8 21 95 3ksm:B 95 274 CRYSTAL STRUCTURE OF ABC-TYPE SUGAR TRANSPORT SYSTEM, PERIPLASMIC COMPONENT FROM HAHELLA CHEJUENSIS
4 0.64 21.6 14.0 1.66 255 9 18 95 3gbv:B 90 287 CRYSTAL STRUCTURE OF A PUTATIVE LACI TRANSCRIPTIONAL REGULATOR FROM BACTEROIDES FRAGILIS
5 0.64 20.5 13.6 1.92 260 8 21 95 3ksm:A 95 276 CRYSTAL STRUCTURE OF ABC-TYPE SUGAR TRANSPORT SYSTEM, PERIPLASMIC COMPONENT FROM HAHELLA CHEJUENSIS
6 0.63 21.0 13.7 1.87 254 8 19 95 2dri:A 95 271 PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS
7 0.63 21.4 13.8 1.88 254 8 19 95 1drj:A 95 271 PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS
8 0.62 20.8 13.6 1.94 256 7 19 95 1drk:A 95 271 PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS
9 0.62 21.8 13.9 1.93 255 8 19 95 2gx6:A 95 271 RATIONAL STABILIZATION OF E. COLI RIBOSE BINDING PROTEIN
10 0.62 21.8 14.0 1.87 254 7 19 95 2ioy:B 95 274 CRYSTAL STRUCTURE OF THERMOANAEROBACTER TENGCONGENSIS RIBOSE BINDING PROTEIN
11 0.62 21.9 14.0 1.96 257 7 19 95 2ioy:A 95 274 CRYSTAL STRUCTURE OF THERMOANAEROBACTER TENGCONGENSIS RIBOSE BINDING PROTEIN
12 0.62 20.9 13.6 1.83 250 7 19 95 1dbp:A 95 271 IDENTICAL MUTATIONS AT CORRESPONDING POSITIONS IN TWO HOMOLOGOUS PROTEINS WITH NON-IDENTICAL EFFECTS
13 0.61 21.1 13.9 1.78 254 11 19 95 3gbv:A 86 289 CRYSTAL STRUCTURE OF A PUTATIVE LACI TRANSCRIPTIONAL REGULATOR FROM BACTEROIDES FRAGILIS
14 0.60 25.2 15.8 1.65 256 10 24 95 2h3h:B 79 305 CRYSTAL STRUCTURE OF THE LIGANDED FORM OF THERMOTOGA MARITIMA GLUCOSE BINDING PROTEIN
15 0.60 23.9 15.4 1.80 260 6 26 95 2qvc:C 79 302 CRYSTAL STRUCTURE OF A PERIPLASMIC SUGAR ABC TRANSPORTER FROM THERMOTOGA MARITIMA
16 0.60 25.1 15.7 1.70 256 9 25 95 2qvc:D 79 302 CRYSTAL STRUCTURE OF A PERIPLASMIC SUGAR ABC TRANSPORTER FROM THERMOTOGA MARITIMA
17 0.60 23.3 15.2 1.74 257 9 26 95 2qvc:B 79 302 CRYSTAL STRUCTURE OF A PERIPLASMIC SUGAR ABC TRANSPORTER FROM THERMOTOGA MARITIMA
18 0.60 24.0 15.4 1.68 256 10 24 95 3c6q:C 79 305 APO AND LIGAND-BOUND FORM OF A THERMOPHILIC GLUCOSE/XYLOSE BINDING PROTEIN
19 0.60 24.0 15.4 1.68 256 10 24 95 3c6q:D 79 305 APO AND LIGAND-BOUND FORM OF A THERMOPHILIC GLUCOSE/XYLOSE BINDING PROTEIN
20 0.60 23.7 15.3 1.70 255 10 25 95 2qvc:A 79 302 CRYSTAL STRUCTURE OF A PERIPLASMIC SUGAR ABC TRANSPORTER FROM THERMOTOGA MARITIMA
Examined 76952 entries (192118 chains),
Matches 1-20 of 284. 		  

Sort by       arrange by SCOP family     match  
   

DOWNLOAD:
Summary of all results as a plain text file   
All results as XML file
 
FOR ALL CHECKED MATCHES
Download target sequences (FASTA format)
Download aligned sequences (FASTA format)
Submit for Multiple Alignment    include query
Bring on top of results
Uncheck all
 

 
 DOWNLOAD  in match range from      to     :
Target sequences (FASTA format)
Aligned sequences (FASTA format)
 

 

 
 PDBe Fold v2.50 15 Nov 2011