PCSS Server

The compute cluster will be down for routine maintenance from June 23 until June 24. Most jobs will be queued until the cluster is back up.

Dave Barkan
Dan Hostetter

Dave Barkan
Ben Webb

Andrej Sali
Charles Craik

Download Granzyme B and Caspase predicted cleavage sites generated from study in Barkan, Hostetter, et al, Bioinformatics, 2010

Global options for running the PCSS Server
Select PCSS Server Mode	Training Mode Application Mode
Email address (optional)
Name your model
Best Protein Structure Model Criteria
Select error handling mode	Quit Ignore

Set these options when TRAINING a new model
Upload Training Peptide File
Training Iterations
Jackknife Fraction

Set these options when APPLYING an existing model
Upload Application Target File
Select Application Peptide Specification Method	User Specified Full Sequence Scan
Upload Peptide Specifier File (Optional)
Upload model file created in Training mode
OR use a pre-generated model for a specific system

PCSS: Peptide Classification using Sequence and Structure