PCSS Server

 

Full PCSS Documentation

Download

Lead Authors:

Dave Barkan
Dan Hostetter

Web Developers:

Dave Barkan
Ben Webb

Corresponding Authors:

Andrej Sali
Charles Craik

Download Granzyme B and Caspase predicted cleavage sites generated from study in Barkan, Hostetter, et al, Bioinformatics, 2010

Caspase Granzyme B

PCSS: Peptide Classification using Sequence and Structure

Global options for running the PCSS Server
Select PCSS Server Mode help
Email address
Name your model
Best Protein Structure Model Criteria help
Select error handling mode help

Set these options when TRAINING a new model
Upload Training Peptide File help
Training Iterations help
Jackknife Fraction help

Set these options when APPLYING an existing model
Upload Application Target File help
Select Application Peptide Specification Method help
Upload Peptide Specifier File (Optional) help
Upload model file created in Training mode help
OR use a pre-generated model for a specific system help