Phylogenetic trees were constructed using PhyML and drawn using Phylip, based on multiple sequence alignments by MUSCLE.
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--- PhyML v3.0 (179M) ---
http://www.atgc-montpellier.fr/phyml
Copyright CNRS - Universite Montpellier II
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. Sequence filename: slc22-muscle.fa.fas.phylip
. Data set: #1
. Tree topology search : Best of NNIs and SPRs
. Initial tree: BioNJ
. Model of amino acids substitution: LG
. Number of taxa: 35
. Log-likelihood: -43588.71626
. Unconstrained likelihood: -10188.57548
. Parsimony: 9123
. Tree size: 23.93560
. Discrete gamma model: Yes
- Number of categories: 4
- Gamma shape parameter: 2.153
. Time used 0h24m54s
. 1494 seconds
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Suggested citation:
S. Guindon & O. Gascuel
"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
Systematic Biology. 2003. 52(5):696-704.
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