Mallur S. Madhusudhan
SALIGN is a general alignment module of the modeling program
The alignments are computed using dynamic programming, making use of several features of the protein sequences and structures.
SALIGN benchmarks from published papers are
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SALIGN : A webserver for alignment of multiple protein sequences and structures. Bioinformatics 2012; doi: 10.1093/bioinformatics/bts302.Hannes Braberg, Ben Webb, Elina Tjioe, Ursula Pieper, Andrej Sali, Mallur S. Madhusudhan.