FoXS Dock

Macromolecular Docking with SAXS Profile

SAXS profile

FoXSDock Help Page

Input Fields

Sample Input

Output Page

The output of FoXSDock is a list of complex models for user specified receptor and ligand molecule. The list is presented to the user in the format of a table; each table line represents one complex model. If you didn't receive any output models, this probably means that none of the docking-generated models fits the data well.

Table Format:

References

  1. D. Schneidman-Duhovny, M. Hammel, and A. Sali.Macromolecular docking restrained by a small angle X-ray scattering profile. J Struct Biol. 2011. 173(3):461-71
  2. D. Schneidman-Duhovny, M. Hammel, and A. Sali. FoXS: A Web server for Rapid Computation and Fitting of SAXS Profiles. NAR 2010.38 Suppl:W540-4.
  3. G.Q. Dong, H. Fan, D. Schneidman-Duhovny, B. Webb, A. Sali. Optimized atomic statistical potentials: Assessment of protein interfaces and loops. Bioinformatics 29, 3158-3166, 2013.

If you use FoXSDock (version master.a0f88b1), please cite:
Schneidman-Duhovny D, Hammel M, Sali A. Macromolecular docking restrained by a small angle X-ray scattering profile. J Struct Biol. 2010 [ Abstract ]
Schneidman-Duhovny D, Hammel M, Tainer JA, and Sali A. FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles. NAR 2016 [ FREE Full Text ]

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