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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link D4Q9M8
Original Database ID EN ENSP00000276927.1
Organism Homo sapiens, synthetic construct
Annotation subname: full=interferon, alpha
1;subname: full=interferon-alpha1;
Sequence Length 189

Dataset Information:

The newest dataset for this sequence was created on 2013-10-23. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region24-189
Protein Length189
Template PDB Code2hymB
Template Region1-165
Sequence Identity83.00%
E-Value0
GA3411.00
MPQS1.93711
z-DOPE-1.37
TSVMod MethodMTALL
TSVMod RMSD3.522
TSVMod NO350.895
DatasetH_sapiens_2013_D1
ModPipe VersionSVN.r1513
Model Date2013-10-23

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Cross-references

Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB2hymnmr based docking model of the complex between the human type i interferon receptor and human interferon alpha-2
DBALI2hymB 
CATH1.20.1250.10 Domain: 2hymB00 Growth Hormone; Chain: A; (100%)
JenaImageLibrary2hym 
Target Sequence
UniProtKBL0N195SubName: Full=Interferon-alpha1 {ECO:0000313|EMBL:BAM72353.1};
UniProtKBL0N195 
PSI Structural Biology KnowledgebaseL0N195 
Protein Model PortalL0N195 
InterProL0N195 
PFAML0N195 
ProdomL0N195 
UniProtKBQ9UMJ3RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ9UMJ3 
PSI Structural Biology KnowledgebaseQ9UMJ3 
Protein Model PortalQ9UMJ3 
InterProQ9UMJ3 
PFAMQ9UMJ3 
ProdomQ9UMJ3 
UniProtKBQ5VYQ2Interferon, alpha 1
UniProtKBQ5VYQ2 
PSI Structural Biology KnowledgebaseQ5VYQ2 
Protein Model PortalQ5VYQ2 
InterProQ5VYQ2 
PFAMQ5VYQ2 
ProdomQ5VYQ2 
UniProtKBD4Q9M8SubName: Full=Interferon, alpha 1;SubName: Full=Interferon-alpha1;
UniProtKBD4Q9M8 
PSI Structural Biology KnowledgebaseD4Q9M8 
Protein Model PortalD4Q9M8 
InterProD4Q9M8 
PFAMD4Q9M8 
ProdomD4Q9M8 
UniProtKBQ2M1L8Interferon, alpha 13
UniProtKBQ2M1L8 
PSI Structural Biology KnowledgebaseQ2M1L8 
Protein Model PortalQ2M1L8 
InterProQ2M1L8 
PFAMQ2M1L8 
ProdomQ2M1L8 
UniProtKBP01562RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBP01562 
PSI Structural Biology KnowledgebaseP01562 
Protein Model PortalP01562 
InterProP01562 
PFAMP01562 
ProdomP01562 
UniProtKBP01562.1IFNA1_HUMAN RecName: Full=Interferon alpha-1/13; Short=IFN-alpha-1/13; AltName: Full=Interferon alpha-D; Short=LeIF D; Flags: Precursor
UniProtKBP01562.1 
PSI Structural Biology KnowledgebaseP01562.1 
Protein Model PortalP01562.1 
InterProP01562.1 
PFAMP01562.1 
ProdomP01562.1 
UniProtKBQ14605RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ14605 
PSI Structural Biology KnowledgebaseQ14605 
Protein Model PortalQ14605 
InterProQ14605 
PFAMQ14605 
ProdomQ14605 
UniProtKBQ2M1L8RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ2M1L8 
PSI Structural Biology KnowledgebaseQ2M1L8 
Protein Model PortalQ2M1L8 
InterProQ2M1L8 
PFAMQ2M1L8 
ProdomQ2M1L8 
UniProtKBQ52LB8RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ52LB8 
PSI Structural Biology KnowledgebaseQ52LB8 
Protein Model PortalQ52LB8 
InterProQ52LB8 
PFAMQ52LB8 
ProdomQ52LB8 
UniProtKBQ5VYQ2RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ5VYQ2 
PSI Structural Biology KnowledgebaseQ5VYQ2 
Protein Model PortalQ5VYQ2 
InterProQ5VYQ2 
PFAMQ5VYQ2 
ProdomQ5VYQ2 
UniProtKBQ7M4Q1RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ7M4Q1 
PSI Structural Biology KnowledgebaseQ7M4Q1 
Protein Model PortalQ7M4Q1 
InterProQ7M4Q1 
PFAMQ7M4Q1 
ProdomQ7M4Q1 
UniProtKBQ8WZ68RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ8WZ68 
PSI Structural Biology KnowledgebaseQ8WZ68 
Protein Model PortalQ8WZ68 
InterProQ8WZ68 
PFAMQ8WZ68 
ProdomQ8WZ68 
UniProtKBQ9UMJ3RecName: Full=Interferon alpha-1/13;Short=IFN-alpha-1/13;AltName: Full=Interferon alpha-D;Short=LeIF D;Flags: Precursor;
UniProtKBQ9UMJ3 
PSI Structural Biology KnowledgebaseQ9UMJ3 
Protein Model PortalQ9UMJ3 
InterProQ9UMJ3 
PFAMQ9UMJ3 
ProdomQ9UMJ3 
RefSeqNP_076918.1 interferon alpha-1/13 precursor [Homo sapiens]
GenPept534486001Sequence 31 from patent US 8506948
GenPept55662866interferon, alpha 1
GenPept594732Sequence 4 from Patent EP 0174143
GenPept649100792IFNA1, partial
GenPept69653IVHUA1 interferon alpha-1 precursor - human
GenPept74418832interferon, alpha 1
GenPept85566975Interferon, alpha 1
GenPept85566978Interferon, alpha 1
GenPept217259402Sequence 10 from patent US 7455846
GenPept51469126unnamed protein product, partial
GenPept50960249Interferon, alpha 1
GenPept124455IFNA1_HUMAN RecName: Full=Interferon alpha-1/13; Short=IFN-alpha-1/13; AltName: Full=Interferon alpha-D; Short=LeIF D; Flags: Precursor
GenPept13128950 interferon alpha-1/13 precursor [Homo sapiens]
GenPept34604861Sequence 8 from patent US 6299877
GenPept339439261Sequence 10 from patent US 7964400
GenPept32729unnamed protein product
GenPept32712unnamed protein product
GenPept313884006interferon, alpha 1, partial
GenPept292698385interferon-alpha1
GenPept223603327Sequence 10 from patent US 7470675
GenPept218034540unnamed protein product, partial
GenPept208968539interferon, alpha 13, partial
GenPept158482695Sequence 10 from patent US 7268120
GenPept13640582 similar to interferon, alpha 13 (H. sapiens) [Homo sapiens]
GenPept119579013interferon, alpha 1
GenPept13640577 interferon, alpha 1 [Homo sapiens]
GenPept50960147Interferon, alpha 1
GenPept491275protein with the immunological activity of human interferon
GenPept491273protein with the immunological actvity of human interferon
GenPept491270protein with the immunological activity of human interferon
GenPept429477224interferon-alpha1
GenPept415130265Sequence 2 from patent US 8309531
GenPept386796interferon alpha-d
GenPept34607073Sequence 8 from patent US 6300475
GenBankAAB59403.1 interferon alpha-d [Homo sapiens]
GenBankAAH74928.1 Interferon, alpha 1 [Homo sapiens]
GenBankEAW58609.1 interferon, alpha 1 [Homo sapiens]
GenBankAAH74929.1 Interferon, alpha 1 [Homo sapiens]
GenBankAAI12301.1 Interferon, alpha 1 [Homo sapiens]
GenBankAAI12303.1 Interferon, alpha 1 [Homo sapiens]
GenBankABA03167.1 interferon, alpha 1 [Homo sapiens]
ENSEMBLENSP00000276927Interferon alpha-1/13 precursor (Interferon alpha-D) (LeIF D). [Homo sapiens]
EMBLCAA25381.1 
EMBLCAA23798.1 
EMBLCAH72911.1 
ENSEMBLENSP00000276927 
ENSEMBLENSP00000276927TDI sequence
ENSEMBLENSP00000276927 
NP_076918.1 
UCSCGenomeBrowserP01562