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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link Q99608.1
Original Database ID EN GENSCAN00000032977
Organism Pan troglodytes, Homo sapiens
Annotation necd_human recname: full=necdin
Sequence Length 321

Dataset Information:

The newest dataset for this sequence was created on 2016-06-12. If you think that a better template has been added to the template database since, you can start a new calculation.

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Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

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Target Region81-300
Protein Length321
Template PDB Code2wa0A
Template Region-10-312
Sequence Identity30.00%
E-Value0
GA3411.00
MPQS1.08206
z-DOPE-0.66
TSVMod MethodMSALL
TSVMod RMSD3.385
TSVMod NO350.795
DatasetMW-Human_D11
ModPipe VersionSVN.r1600
Model Date2016-06-12

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Cross-references

Template Structure
PDB2wa0crystal structure of the human magea4
DBALI2wa0A 
JenaImageLibrary2wa0 
Target Sequence
UniProtKBH2Q916SubName: Full=Necdin homolog {ECO:0000313|EMBL:JAA02525.1};SubName: Full=Uncharacterized protein {ECO:0000313|Ensembl:ENSPTRP00000011660};
UniProtKBH2Q916 
PSI Structural Biology KnowledgebaseH2Q916 
Protein Model PortalH2Q916 
InterProH2Q916 
PFAMH2Q916 
ProdomH2Q916 
UniProtKBX5D982SubName: Full=Necdin isoform A {ECO:0000313|EMBL:AHW56528.1};Flags: Fragment;
UniProtKBX5D982 
PSI Structural Biology KnowledgebaseX5D982 
Protein Model PortalX5D982 
InterProX5D982 
PFAMX5D982 
ProdomX5D982 
UniProtKBQ99608RecName: Full=Necdin;
UniProtKBQ99608 
PSI Structural Biology KnowledgebaseQ99608 
Protein Model PortalQ99608 
InterProQ99608 
PFAMQ99608 
ProdomQ99608 
UniProtKBB2R6Z5RecName: Full=Necdin;
UniProtKBB2R6Z5 
PSI Structural Biology KnowledgebaseB2R6Z5 
Protein Model PortalB2R6Z5 
InterProB2R6Z5 
PFAMB2R6Z5 
ProdomB2R6Z5 
UniProtKBB2R6Z5SubName: Full=cDNA, FLJ93195, Homo sapiens necdin homolog (mouse) (NDN), mRNA;
UniProtKBB2R6Z5 
PSI Structural Biology KnowledgebaseB2R6Z5 
Protein Model PortalB2R6Z5 
InterProB2R6Z5 
PFAMB2R6Z5 
ProdomB2R6Z5 
UniProtKBH2Q916SubName: Full=Uncharacterized protein;
UniProtKBH2Q916 
PSI Structural Biology KnowledgebaseH2Q916 
Protein Model PortalH2Q916 
InterProH2Q916 
PFAMH2Q916 
ProdomH2Q916 
UniProtKBQ99608.1NECD_HUMAN RecName: Full=Necdin
UniProtKBQ99608.1 
PSI Structural Biology KnowledgebaseQ99608.1 
Protein Model PortalQ99608.1 
InterProQ99608.1 
PFAMQ99608.1 
ProdomQ99608.1 
UniProtKBQ99608RecName: Full=Necdin;
UniProtKBQ99608 
PSI Structural Biology KnowledgebaseQ99608 
Protein Model PortalQ99608 
InterProQ99608 
PFAMQ99608 
ProdomQ99608 
UniProtKBB2R6Z5RecName: Full=Necdin;
UniProtKBB2R6Z5 
PSI Structural Biology KnowledgebaseB2R6Z5 
Protein Model PortalB2R6Z5 
InterProB2R6Z5 
PFAMB2R6Z5 
ProdomB2R6Z5 
RefSeqXP_510257.2 PREDICTED: necdin [Pan troglodytes]
RefSeqNP_002478.1 necdin [Homo sapiens]
GenPept114655931 PREDICTED: necdin [Pan troglodytes]
GenPept649150998NDN, partial
GenPept608785383necdin isoform A, partial
GenPept13651964 necdin [Homo sapiens]
GenPept14250591Necdin homolog (mouse)
GenPept17380142NECD_HUMAN RecName: Full=Necdin
GenPept1754971NECDIN related protein
GenPept189053476unnamed protein product
GenPept208968603necdin homolog, partial
GenPept2516266necdin
GenPept312152250necdin homolog (mouse), partial
GenPept314655288Sequence 1 from patent US 7825098
GenPept4505349 necdin [Homo sapiens]
GenPept568531369Sequence 12319 from patent US 8586006
GenBankAAH08750.1 Necdin homolog (mouse) [Homo sapiens]
GenBankAAB39469.1 NECDIN related protein [Homo sapiens]
ENSEMBLENSP00000332643Necdin. [Homo sapiens]
UCSCGenomeBrowserQ99608 
UCSCGenomeBrowserENSPTRT00000012596.1 
ENSEMBLENSP00000332643 
ENSEMBLENSPTRP00000011660 
ENSEMBLENSP00000332643TDI sequence
NP_002478.1 
ENSEMBLGENSCAN00000018977 
ENSEMBLENSP00000332643