Modeling Leverage using Template Based Modeling

Modeling Leverage Statistics for CSMP Structures ( 43 Datasets, 0 Calculations Pending)

	Total	Average	Minimum	Maximum
Number of Sequences in Profile	272143	6328	88	29839
Number of modeled Sequences*	192753	4482	45	21532
Number of Sequences modeled with <30% Sequence Identity*	170372	3962	1	21181
Number of Sequences modeled with >=30% and <=50% Sequence Identity*	30648	712	11	5290
Number of Sequences modeled with >50% Sequence Identity*	2857	66	2	313
Minimum Sequence Identity*		9	3	23
Maximum Sequence Identity*		89	66	98

* only models which are based on at least 50% of the length of the input template are considered

Modeling Leverage for CSMP
	PDB Code	# Seq	# modeled Seq	# modeled Seq (50% coverage)	Min/Max SeqIdent		# Seq <30%	# Seq 30-50%	# Seq >50%	Date	New Fold	Functional Annotation
1	5eqbA	26194	26186	15559	6	84	15155	601	64	2016-01-16	n/a	Crystal Structure Of Lanosterol 14-alpha Demethylase With Intact Transmembrane Domain Bound To Itraconazole
2	4oaaA	755	753	726	13	98	597	103	30	2014-04-08	n/a	E. Coli Lactose Permease G46w,g262w Bound To Sugar
3	4k0fA	26847	26800	13184	5	84	12837	454	49	2014-04-06	n/a	Lanosterol 14-alpha Demethylase With Intact Transmembrane Domain Bound To Itraconazole
4	4lxjA	26965	26880	12774	5	84	12427	440	47	2014-04-04	n/a	Saccharomyces Cerevisiae Lanosterol 14-alpha Demethylase With Lanosterol Bound
5	4ggmX	2482	2442	2215	8	88	1920	293	11	2014-04-03	n/a	Lpxi
6	2o9fA	3986	3981	3778	4	97	2297	2131	295	2014-04-03	n/a	Aqpz Mutant L170c
7	2o9eA	3993	3988	3789	4	97	2326	2145	295	2014-04-02	n/a	Aqpz Mutant T183c Complexed With Mercury
8	4k0jA	3016	3016	1834	6	76	1489	349	6	2014-04-02	n/a	Heavy Metal Efflux Pump, Crystal Form I
9	4ggiA	2425	2394	2209	9	88	1930	278	11	2014-04-02	n/a	Lpxi D225a Mutant
10	4ltoA	1117	1115	1063	11	66	811	297	60	2014-04-02	n/a	Bacterial Sodium Channel In High Calcium, I222 Space Group
11	3u1mA	8750	8658	3902	4	91	3815	144	17	2014-04-02	n/a	Mrna Splicing Complex Component Cwc2
12	4k1cA	970	970	917	16	80	634	277	28	2014-04-01	n/a	Vcx1 Calcium/proton Exchanger
13	4k0eA	3266	3266	1991	6	75	1647	342	5	2014-04-01	n/a	Heavy Metal Efflux Pump, Crystal Form Ii
14	3u1lA	9175	9087	4568	3	92	4481	170	16	2014-04-01	n/a	Mrna Splicing Complex Component Cwc2
15	4j6eA	2374	2356	2243	8	88	1958	284	11	2014-04-01	n/a	Lpxi D225a Mutant
16	3ne2A	4219	4210	4031	13	80	1567	2933	29	2014-04-01	n/a	Archaeoglobus Fulgidus Aquaporin
17	2f2bA	4236	4223	4031	12	72	1296	3167	23	2014-03-31	n/a	Integral Membrane Protein Aquaporin Aqpm At 1.68a Resolution
18	2o9gA	4349	4337	4143	9	97	2451	2271	313	2014-03-31	n/a	Aqpz Mutant L170c Complexed With Mercury
19	4j05A	29839	28867	13571	4	87	13361	405	6	2013-03-25	n/a	PiPT phosphate transporter
20	3jz3A	22732	21843	21532	5	98	21181	5290	25	2011-08-18	n/a	Cytoplasmic Segment Of Histidine Kinase Qsec
21	3k1bA	4045	4044	3911	7	93	3684	209	196	2011-08-18	n/a	Ompf Porin
22	3q41A	9677	9227	8909	4	98	8853	56	26	2011-08-16	n/a	Glutamate [NMDA] receptor subunit zeta-1
23	3k19A	4045	4044	3912	7	93	3685	209	196	2011-08-16	n/a	Ompf Porin
24	2ksfA	214	206	206	11	88	153	46	11	2010-03-15	n/a	Membrane Domain Of E. Coli Histidine Kinase Receptor Kdpd, Center For Structures Of Membrane Proteins (Csmp) Target 4312c
25	2ksdA	167	73	73	20	98	2	18	53	2010-03-15	n/a	Membrane Domain Of E. Coli Histidine Kinase Receptor Arcb, Center For Structures Of Membrane Proteins (Csmp) Target 4310c
26	2kseA	88	47	45	23	92	12	11	22	2010-03-15	n/a	Membrane Domain Of E. Coli Histidine Kinase Receptor Qsec, Center For Structures Of Membrane Proteins (Csmp) Target 4311c
27	3mp7B	230	176	176	13	96	126	41	9	2009-10-16	n/a	Preprotein translocase subunit secE
28	3mp7A	684	680	654	14	85	543	153	6	2009-10-16	n/a	Preprotein translocase subunit secY
29	3k8nA	13522	12352	11933	9	98	10647	1217	131	2009-10-15	n/a	CCMG Protein
30	3lnnA	11695	11019	9178	9	97	9104	839	2	2009-10-14	n/a	Membrane fusion protein (MFP) heavy metal cation efflux ZneB (CzcB-like)
31	2ksdA	133	57	57	21	97	1	17	39	2009-10-07	n/a	Aerobic respiration control sensor protein arcB
32	3hd6A	658	658	603	14	88	533	62	32	2009-09-18	n/a	Ammonium transporter Rh type C
33	3gd8A	2182	2078	1984	15	98	744	1148	92	2009-04-15	n/a	Aquaporin-4
34	3c02A	2245	2233	2153	13	70	1621	529	3	2008-08-19	n/a	Aquaglyceroporin from Plasmodium falciparum
35	2v8nA	7497	7189	7152	6	95	7099	19	34	2008-03-25	n/a	Wild-Type Structure Of Lactose Permease
36	2i2rA	2270	1730	1699	10	96	850	738	111	2008-03-25	n/a	Kchip1KV4.3 T1 COMPLEX
37	2cfpA	7490	7134	7100	6	95	7058	19	24	2008-03-25	n/a	Sugar Free Lactose Permease At Acidic Ph
38	3b7dA	3400	3301	3163	11	98	2621	276	267	2008-03-25	n/a	Glur2 Ligand Binding Core (Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
39	2ns1A	2093	1544	1478	15	96	540	799	139	2007-10-27	n/a	E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk
40	1pv7A	5815	5606	5550	6	88	5498	20	32	2007-09-19	n/a	Sugar Free Lactose Permease At Neutral Ph
41	2evuA	2061	2000	1820	13	93	625	1186	9	2007-04-26	n/a	Aquaporin Aqpm
42	3bhsA	2103	1399	1329	14	77	1146	181	2	2007-04-24	n/a	Nitrosomonas europaea Rh50 and mechanism of conduction by Rhesus protein family of channels
43	2o9dA	2139	1753	1608	13	98	1047	481	80	2007-04-24	n/a	Aqpz Mutant T183c
										(*) Annotation derived from profunc and PDBe-fold results

Modeling Leverage

Modeling Leverage Statistics for CSMP Structures ( 43 Datasets, 0 Calculations Pending)

Modeling Leverage for CSMP