PDBeFold

Home

Structure Similarity pdbe.org/fold

Bringing Structure to Biology

FEEDBACK

Structure Alignment Results

Query: pdb entry 4dnd:A , 95 residues
CRYSTAL STRUCTURE OF SYNTAXIN 10 FROM HOMO SAPIENS

Examined 76952 entries (192118 chains),
Matches 1-20 of 432.

resort results

##	Scoring			Rmsd	N_algn	N_g	%_seq	Query	Target (PDB entry)
##	Q	P	Z	Rmsd	N_algn	N_g	%_seq	%_sse	Match	%_sse	N_res	×	Title
`1`	`1.00`	`16.2`	`11.9`	`0.00`	`95`	`0`	`100`	`100`	`4dnd:A`	`100`	`95`		CRYSTAL STRUCTURE OF SYNTAXIN 10 FROM HOMO SAPIENS
`2`	`0.74`	`5.7`	`6.9`	`0.98`	`91`	`2`	`68`	`75`	`1lvf:A`	`75`	`106`		SYNTAXIN 6
`3`	`0.70`	`5.4`	`6.7`	`1.13`	`89`	`1`	`70`	`75`	`1lvf:B`	`100`	`104`		SYNTAXIN 6
`4`	`0.57`	`2.9`	`4.8`	`1.91`	`79`	`2`	`10`	`75`	`1x79:A`	`100`	`82`		CRYSTAL STRUCTURE OF HUMAN GGA1 GAT DOMAIN COMPLEXED WITH THE GAT-BINDING DOMAIN OF RABAPTIN5
`5`	`0.55`	`2.9`	`4.9`	`1.85`	`80`	`4`	`11`	`75`	`1wr6:D`	`100`	`88`		CRYSTAL STRUCTURE OF GGA3 GAT DOMAIN IN COMPLEX WITH UBIQUITIN
`6`	`0.55`	`3.1`	`5.0`	`1.77`	`81`	`3`	`11`	`75`	`1yd8:G`	`100`	`93`		COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN
`7`	`0.55`	`3.1`	`5.0`	`1.77`	`81`	`3`	`11`	`75`	`1yd8:H`	`100`	`93`		COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN
`8`	`0.54`	`3.0`	`4.9`	`1.89`	`82`	`3`	`15`	`75`	`2c5i:T`	`100`	`94`		N-TERMINAL DOMAIN OF TLG1 COMPLEXED WITH N-TERMINUS OF VPS51 IN DISTORTED CONFORMATION
`9`	`0.53`	`3.1`	`5.0`	`1.88`	`79`	`3`	`13`	`75`	`2c5k:T`	`100`	`89`		N-TERMINAL DOMAIN OF TLG1 COMPLEXED WITH N-TERMINUS OF VPS51
`10`	`0.52`	`2.4`	`4.4`	`2.16`	`84`	`2`	`7`	`75`	`3onl:C`	`100`	`95`		YEAST ENT3_ENTH-VTI1P_HABC COMPLEX STRUCTURE
`11`	`0.48`	`2.1`	`4.2`	`2.13`	`82`	`2`	`7`	`75`	`3onj:A`	`100`	`97`		CRYSTAL STRUCTURE OF YEAST VTI1P_HABC DOMAIN
`12`	`0.47`	`2.1`	`4.2`	`2.72`	`91`	`2`	`5`	`75`	`3mq1:C`	`100`	`101`		CRYSTAL STRUCTURE OF DUST MITE ALLERGEN DER P 5
`13`	`0.47`	`2.9`	`4.8`	`1.74`	`78`	`3`	`8`	`75`	`1vcs:A`	`100`	`102`		SOLUTION STRUCTURE OF RSGI RUH-009, AN N-TERMINAL DOMAIN OF VTI1A [MUS MUSCULUS]
`14`	`0.47`	`2.1`	`4.2`	`2.00`	`69`	`2`	`9`	`75`	`2w2u:B`	`100`	`74`		STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN ARCHAEAL ESCRT-III AND AAA-ATPASE
`15`	`0.46`	`2.2`	`4.3`	`1.90`	`68`	`2`	`6`	`75`	`2v6y:A`	`100`	`75`		STRUCTURE OF THE MIT DOMAIN FROM A S. SOLFATARICUS VPS4- LIKE ATPASE
`16`	`0.46`	`1.9`	`4.0`	`2.12`	`70`	`3`	`9`	`75`	`2w2u:A`	`100`	`75`		STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN ARCHAEAL ESCRT-III AND AAA-ATPASE
`17`	`0.45`	`2.5`	`4.5`	`2.22`	`88`	`2`	`5`	`75`	`2jmh:A`	`100`	`117`		NMR SOLUTION STRUCTURE OF BLO T 5, A MAJOR MITE ALLERGEN FROM BLOMIA TROPICALIS
`18`	`0.44`	`1.8`	`3.8`	`1.77`	`76`	`3`	`11`	`75`	`1qsd:A`	`100`	`102`		RBL2P, BETA-TUBULIN BINDING POST-CHAPERONIN COFACTOR
`19`	`0.44`	`2.0`	`4.1`	`2.44`	`87`	`2`	`9`	`75`	`1s94:A`	`100`	`109`		CRYSTAL STRUCTURE OF THE HABC DOMAIN OF NEURONAL SYNTAXIN FROM THE SQUID LOLIGO PEALEI
`20`	`0.44`	`1.8`	`3.8`	`1.80`	`76`	`3`	`11`	`75`	`1qsd:B`	`100`	`102`		RBL2P, BETA-TUBULIN BINDING POST-CHAPERONIN COFACTOR

Examined 76952 entries (192118 chains),
Matches 1-20 of 432.

Sort by arrange by SCOP family match

DOWNLOAD:

Summary of all results as a plain text file

All results as XML file

FOR ALL CHECKED MATCHES

Download target sequences (FASTA format)

Download aligned sequences (FASTA format)

Submit for Multiple Alignment    include query

Bring on top of results

Uncheck all

DOWNLOAD in match range from      to     :

Target sequences (FASTA format)

Aligned sequences (FASTA format)

PDBe Fold v2.50 15 Nov 2011