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Bibliography

Braun & Gõ, 1985
Braun, W. & Gõ, N. (1985).
J. Mol. Biol. 186, 611-626.

Brünger, 1992
Brünger, A. T. (1992).
X-PLOR Manual Version 3.1.
Yale University New Haven, Connecticut.

Felsenstein, 1985
Felsenstein, J. (1985).
Evolution, 39, 783-791.

Fiser et al., 2000
Fiser, A., Do, R. K. G., & Šali, A. (2000).
Protein Sci. 9, 1-21.
(Also available online).

Gotoh, 1982
Gotoh, O. (1982).
J. Mol. Biol. 162, 705-708.

Hubbard & Blundell, 1987
Hubbard, T. J. P. & Blundell, T. L. (1987).
Protein Eng. 1, 159-171.

IUPAC-IUB, 1970
IUPAC-IUB (1970).
Biochem. 9, 3471-3479.

Kabsch & Sander, 1983
Kabsch, W. & Sander, C. (1983).
Biopolymers, 22, 2577-2637.

Karlin & Altschul, 1990
Karlin, S. & Altschul, S. F. (1990).
Proc. Natl. Acad. Sci. USA, 87, 2264-2268.

Kendrew et al., 1970
Kendrew, J. C., Klyne, W., Lifson, S., Miyazawa, T., Némethy, G., Phillips, D. C., Ramachandran, G. N., & Scheraga, H. (1970).
J. Mol. Biol. 52, 1-17.

MacKerell et al., 1998
MacKerell, Jr., A. D., Bashford, D., Bellott, M., Dunbrack Jr., R., Evanseck, J., Field, M., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F., Mattos, C., Michnick, S., Ngo, T., Nguyen, D., Prodhom, B., Reiher, III, W., Roux, B.and Schlenkrich, M., Smith, J., Stote, R.and Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D., & Karplus, M. (1998).
J. Phys. Chem. B, 102, 3586-3616.

Melo & Feytmans, 1997
Melo, F. & Feytmans, E. (1997).
J. Mol. Biol. 267, 207-222.

Melo et al., 2002
Melo, F., Sánchez, R., & Šali, A. (2002).
Protein Sci. 11, 430-448.
(Also available online).

Metropolis et al., 1953
Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., & Teller, E. (1953).
J. Chem. Phys. 21, 1087-1092.

Needleman & Wunsch, 1970
Needleman, S. B. & Wunsch, C. D. (1970).
J. Mol. Biol. 48, 443-453.

Nicholls et al., 1991
Nicholls, A., Sharp, K. A., & Honig, B. (1991).
Proteins, 11, 281-296.

Press et al., 1992
Press, W. H., Teukolsky, S. A., Vetterling, W. T., & Flannery, B. P. (1992).
Numerical Recipes, 2nd edition.
Cambridge: Cambridge University Press.

Richards & Kundrot, 1988
Richards, F. M. & Kundrot, C. E. (1988).
Proteins, 3, 71-84.

Richmond & Richards, 1978
Richmond, T. J. & Richards, F. M. (1978).
J. Mol. Biol. 119, 537-555.

Šali & Blundell, 1990
Šali, A. & Blundell, T. L. (1990).
J. Mol. Biol. 212, 403-428.
(Also available online).

Šali & Blundell, 1993
Šali, A. & Blundell, T. L. (1993).
J. Mol. Biol. 234, 779-815.
(Also available online).

Šali & Overington, 1994
Šali, A. & Overington, J. (1994).
Protein Sci. 3, 1582-1596.
(Also available online).

Sankoff & Kruskal, 1983
Sankoff, D. & Kruskal, J. B. (1983).
Time warps, string edits, and macromolecules: The theory and practice of sequence comparison.
Reading, MA: Addison-Wesley Publishing Company.

Sellers, 1974
Sellers, P. H. (1974).
J. Comb. Theor. A16, 253-258.

Shanno & Phua, 1980
Shanno, D. F. & Phua, K. H. (1980).
ACM Trans. Math. Soft. 6, 618-622.

Shanno & Phua, 1982
Shanno, D. F. & Phua, K. H. (1982).
In: Collected algorithms from ACM. Trans. Math. Software volume 2(1).

Smith & Waterman, 1981
Smith, T. F. & Waterman, M. S. (1981).
J. Mol. Biol. 147, 195-197.

Subbiah et al., 1993
Subbiah, S., Laurents, D. V., & Levitt, M. (1993).
Curr. Biol. 3, 141-148.

Sutcliffe et al., 1987
Sutcliffe, M. J., Haneef, I., Carney, D., & Blundell, T. L. (1987).
Protein Eng. 1, 377-384.

Topf et al., 2005
Topf, M., Baker, M. L., John, B., Chiu, W., & Šali, A. (2005).
J. Struct. Biol. in press.

van Schaik et al., 1993
van Schaik, R. C., Berendsen, H. J., & Torda, A. E. (1993).
J. Mol. Biol. 234, 751-762.

Verlet, 1967
Verlet, J. (1967).
Phys. Rev. 159, 98-103.



Ben Webb 2005-01-27