ModBase
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ModBase Contents
| Number of Models | 38,311,565 |
|---|---|
| Number of Unique Sequences modeled | 6,501,420 |
| Unique sequences attempted | 8,082,006 |
| Number of PDB chains | 87,639 |
| Statistics updated at\tFri Oct 17 10:02:15 PM PDT 2025 | |
Genome Datasets
| Show/hide older datasets | Genome | View dataset in ModBase | Download dataset | Number of Transcripts | Number of modeled Transcripts | Number of Models | Year |
|---|---|---|---|---|---|---|---|
| Aedes aegypti |  |  | 16,445 | 14,638 | 47,620 | 2016 | |
 | Aeropyrum pernix | | | 1,700 | 1,563 | 4,313 | 2016 |
| Aeropyrum pernix | | 1,700 | 1,183 | 2,698 | 2007 | ||
| Arabidopsis thaliana | | | 40,702 | 36,678 | 119,222 | 2021 |
| Arabidopsis thaliana | | | 47,160 | 36,520 | 116,372 | 2013 | |
| Archaeoglobus fulgidus | | | 2,342 | 2,153 | 5,880 | 2016 |
| Archaeoglobus fulgidus | | 2,409 | 1,794 | 3,980 | 2007 | ||
| Aspergillus oryzae | | 12,051 | 9,546 | 27,539 | 2013 | ||
| Babesia bovis | | | 3,689 | 3,229 | 9,903 | 2017 | |
| Bacillus subtilis | | | 4,174 | 3,764 | 9,810 | 2016 |
| Bacillus subtilis | | 4,105 | 3,373 | 9,244 | 2007 | ||
| Brugia malayi | | | 11,349 | 9,685 | 28,770 | 2017 |
| Brugia malayi | | 11,397 | 7,850 | 23,216 | 2008 | ||
| Burkholderia mallei | | | 4,795 | 4,312 | 12,037 | 2016 |
| Burkholderia mallei | | 4,798 | 3,908 | 11,032 | 2007 | ||
| Caenorhabditis elegans | | | 27,954 | 24,010 | 73,668 | 2017 |
| Caenorhabditis elegans | | 22,698 | 18,996 | 52,232 | 2007 | ||
| Candida albicans | | | 9,067 | 7,571 | 20,599 | 2018 | |
| Canis familiaris | | | 37,262 | 34,446 | 117,275 | 2017 |
| Canis familiaris | | 30,264 | 22,614 | 65,595 | 2007 | ||
| Chlamydia trachomatis | | | 887 | 804 | 2,320 | 2019 | |
| Clostridium tetani | | | 2,687 | 2,450 | 6,869 | 2016 |
| Clostridium tetani | | 2,412 | 2,158 | 5,864 | 2007 | ||
| Coxsackievirus B3 (strain Woodruff) | | 15 | 13 | 24 | 2012 | ||
| Cryptosporidium hominis | | | 3,885 | 3,400 | 9,763 | 2016 |
| Cryptosporidium hominis | | 3,886 | 1,614 | 3,287 | 2006 | ||
| Cryptosporidium parvum | | | 3,805 | 3,466 | 10,794 | 2016 |
| Cryptosporidium parvum | | 3,806 | 1,918 | 3,969 | 2006 | ||
| Dengue virus 2 16681-PDK53 | | 12 | 12 | 32 | 2012 | ||
| Drosophila melanogaster | | | 21,986 | 19,549 | 67,456 | 2017 |
| Drosophila melanogaster | | 17,104 | 9,381 | 24,683 | 2006 | ||
| Echinococcus granulosus | | | 10,222 | 8,768 | 28,535 | 2018 | |
| Echinococcus multilocularis | | | 10,318 | 8,998 | 29,499 | 2018 | |
| Edwardsiella tarda EIB202 | | 3,625 | 3,073 | 6,806 | 2014 | ||
| Entamoeba histolytica | | | 8,006 | 7,287 | 23,003 | 2017 | |
| Escherichia coli | | | 4,103 | 3,843 | 8,741 | 2016 |
| Escherichia coli | | 4,206 | 3,150 | 5,994 | 2006 | ||
| Escherichia coli K12 | | 4,069 | 3,952 | 11,132 | 2011 | ||
| Giardia lamblia (assemblage A) | | | 9,295 | 6,026 | 18,341 | 2017 | |
| Giardia Lamblia P15 | | 5,054 | 5,004 | 21,917 | 2011 | ||
| Helicobacter pylori 26695 | | 1,552 | 1,528 | 4,744 | 2010 | ||
| Homo sapiens | | | 180,967 | 153,964 | 475,451 | 2020 |
| Homo sapiens | | | 170,418 | 140,104 | 396,574 | 2016 | |
| Homo sapiens | | 133,658 | 111,905 | 317,653 | 2013 | ||
| Homo sapiens | | 63,075 | 58,631 | 219,440 | 2010 | ||
| Homo sapiens | | 30,552 | 26,034 | 94,276 | 2008 | ||
| Homo sapiens | | 32,010 | 21,270 | 51,076 | 2007 | ||
| Human enterovirus 71 | | 25 | 23 | 49 | 2012 | ||
| Human poliovirus 1 Mahoney | | 11 | 10 | 29 | 2012 | ||
| Lactobacillus reuteri DSM 20016 | | 1,865 | 1,611 | 4,126 | 2012 | ||
| Lactobacillus reuteri MM4-1A | | 2,023 | 1,683 | 4,268 | 2013 | ||
| Lactobacillus reuteri SD2112 | | 2,201 | 1,784 | 4,529 | 2013 | ||
| Leishmania braziliensis | | | 9,125 | 7,744 | 22,393 | 2017 | |
| Leishmania donovani | | | 7,736 | 6,889 | 21,193 | 2017 | |
| Leishmania infantum | | | 8,002 | 7,205 | 22,082 | 2017 | |
| Leishmania major | | | 8,038 | 7,186 | 22,269 | 2016 |
| Leishmania major | | 8,070 | 6,796 | 22,157 | 2011 | ||
| Leishmania major | | 8,009 | 3,975 | 8,285 | 2006 | ||
| Leishmania mexicana | | | 8,058 | 7,214 | 22,272 | 2017 | |
| Loa loa | | | 16,282 | 13,111 | 35,256 | 2019 | |
| Methanobrevibacter ruminantium M1 | | 2,209 | 1,745 | 3,986 | 2012 | ||
| Methanococcus jannaschii | | | 1,764 | 1,635 | 4,177 | 2016 |
| Methanococcus jannaschii | | 1,785 | 1,480 | 1,707 | 2007 | ||
| Methanopyrus kandleri | | 1,687 | 1,111 | 2,466 | 2007 | ||
| Mus musculus | | | 57,825 | 52,443 | 174,534 | 2017 |
| Mus musculus | | 30,133 | 25,337 | 70,765 | 2008 | ||
| Mycobacterium bovis BCG str. Pasteur 1173P2 | | 3,887 | 3,845 | 11,363 | 2012 | ||
| Mycobacterium leprae | | | 1,603 | 1,479 | 3,938 | 2018 |
| Mycobacterium leprae | | 1,609 | 1,606 | 4,989 | 2011 | ||
| Mycobacterium leprae | | 1,601 | 1,178 | 2,493 | 2006 | ||
| Mycobacterium smegmatis str. MC2 155 | | 6,598 | 3,820 | 11,781 | 2012 | ||
| Mycobacterium tuberculosis | | | 3,965 | 3,724 | 10,158 | 2018 |
| Mycobacterium tuberculosis | | 3,956 | 3,856 | 12,638 | 2011 | ||
| Mycobacterium tuberculosis | | 3,972 | 3,373 | 10,617 | 2011 | ||
| Mycobacterium tuberculosis | | 3,954 | 2,808 | 5,913 | 2006 | ||
| Mycobacterium tuberculosis H37Rv | | 3,966 | 3,936 | 11,746 | 2012 | ||
| Mycobacterium ulcerans | | | 4,200 | 3,774 | 10,832 | 2019 | |
| Mycoplasma genitalium | | | 515 | 483 | 1,408 | 2018 | |
| Mycoplasma pneumoniae | | | 691 | 611 | 1,720 | 2017 |
| Mycoplasma pneumoniae | | 687 | 426 | 857 | 2006 | ||
| Nanoarchaeum equitans | | 536 | 447 | 496 | 2007 | ||
| Neospora caninum | | | 7,112 | 6,581 | 23,593 | 2017 | |
| Onchocerca volvulus | | | 12,189 | 9,947 | 30,210 | 2019 | |
| Panicum virgatum | | | 71,059 | 64,493 | 212,837 | 2021 | |
| Picrophilus torridus | | | 1,563 | 1,468 | 4,270 | 2017 |
| Picrophilus torridus | | 1,535 | 1,260 | 2,902 | 2007 | ||
| Plasmodium berghei ANKA | | | 5,026 | 4,777 | 15,372 | 2017 | |
| Plasmodium falciparum | | | 8,547 | 8,064 | 28,260 | 2015 |
| Plasmodium falciparum | | 5,342 | 2,599 | 5,053 | 2006 | ||
| Plasmodium knowlesi | | | 5,173 | 4,740 | 14,222 | 2018 | |
| Plasmodium vivax | | | 5,583 | 5,059 | 15,860 | 2015 |
| Plasmodium vivax | | 5,334 | 2,359 | 4,670 | 2006 | ||
| Plasmodium yoelii | | | 7,661 | 6,048 | 18,177 | 2018 | |
| Pseudomonas aeruginosa | | | 5,560 | 5,277 | 14,763 | 2017 |
| Pseudomonas aeruginosa | | 5,559 | 3,806 | 9,222 | 2006 | ||
| Pyrobaculum aerophilum | | 2,600 | 1,566 | 3,497 | 2007 | ||
| Pyrococcus furiosus | | | 1,962 | 1,816 | 4,525 | 2017 |
| Pyrococcus furiosus | | 2,113 | 1,524 | 3,373 | 2007 | ||
| Rickettsia prowazekii | | | 843 | 790 | 2,285 | 2017 |
| Rickettsia prowazekii | | 835 | 754 | 2,135 | 2007 | ||
| Saccharomyces cerevisiae | | | 5,847 | 5,277 | 14,707 | 2017 |
| Saccharomyces cerevisiae | | 6,600 | 3,440 | 9,463 | 2009 | ||
| SARS-CoV-2 | | | 53 | 49 | 168 | 2020 | |
| Schistosoma japonicum | | | 12,715 | 11,036 | 31,058 | 2018 | |
| Schistosoma mansoni | | | 12,501 | 10,711 | 32,119 | 2019 |
| Schistosoma mansoni | | 12,720 | 8,616 | 26,193 | 2010 | ||
| Staphylococcus aureus subsp. aureus MRSA252 | | | 2,635 | 1,184 | 3,161 | 2008 | |
| Streptococcus mutans | | 2,385 | 1,403 | 2,818 | 2012 | ||
| Streptococcus pyogenes | | | 1,687 | 1,575 | 4,081 | 2016 |
| Streptococcus pyogenes | | 1,691 | 1,440 | 3,984 | 2007 | ||
| Sulfolobus solfataricus | | 2,922 | 2,006 | 4,451 | 2007 | ||
| Theileria parva | | | 4,065 | 3,486 | 10,158 | 2018 | |
| Thermoplasma acidophilum | | | 1,506 | 1,393 | 4,059 | 2016 |
| Thermoplasma acidophilum | | 1,480 | 1,220 | 2,801 | 2007 | ||
| Thermoplasma volcanium | | | 1,541 | 1,402 | 4,002 | 2017 |
| Thermoplasma volcanium | | 1,497 | 1,204 | 2,806 | 2007 | ||
| Toxoplasma gondii | | | 8,311 | 7,376 | 25,634 | 2017 |
| Toxoplasma gondii | | 7,787 | 1,530 | 3,064 | 2008 | ||
| Treponema pallidum | | | 969 | 883 | 2,593 | 2017 |
| Treponema pallidum | | 1,030 | 1,027 | 2,764 | 2009 | ||
| Trypanosoma brucei | | | 9,682 | 7,778 | 22,766 | 2017 |
| Trypanosoma brucei | | 8,965 | 3,900 | 8,054 | 2006 | ||
| Trypanosoma brucei gambiense | | | 7,616 | 6,662 | 20,966 | 2018 | |
| Trypanosoma congolense | | | 9,895 | 8,092 | 22,593 | 2018 | |
| Trypanosoma cruzi | | | 19,245 | 16,708 | 49,091 | 2017 |
| Trypanosoma cruzi | | 19,245 | 7,390 | 14,858 | 2006 | ||
| Wolbachia | | 805 | 621 | 1,873 | 2008 | ||
| Xenopus | | 27,952 | 25,453 | 69,168 | 2007 | ||
| Yersinia pestis | | 3,882 | 3,214 | 8,370 | 2007 |