ModBase Access


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ModBase Contents
Number of Models | 38,311,467
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Number of Unique Sequences modeled | 6,501,396
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Unique sequences attempted | 8,081,985
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Number of PDB chains | 87,621
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Statistics updated at\tFri Oct 10 10:02:09 PM PDT 2025
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Genome Datasets
| Genome | | | Number of Transcripts | Number of modeled Transcripts | Number of Models | Year
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| Aedes aegypti |  |  | 16,445 | 14,638 | 47,620 | 2016
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 | Aeropyrum pernix |  |  | 1,700 | 1,563 | 4,313 | 2016
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| Aeropyrum pernix |  | | 1,700 | 1,183 | 2,698 | 2007
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 | Arabidopsis thaliana |  |  | 40,702 | 36,678 | 119,222 | 2021
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| Arabidopsis thaliana |  |  | 47,160 | 36,520 | 116,372 | 2013
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 | Archaeoglobus fulgidus |  |  | 2,342 | 2,153 | 5,880 | 2016
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| Archaeoglobus fulgidus |  | | 2,409 | 1,794 | 3,980 | 2007
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| Aspergillus oryzae |  | | 12,051 | 9,546 | 27,539 | 2013
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| Babesia bovis |  |  | 3,689 | 3,229 | 9,903 | 2017
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 | Bacillus subtilis |  |  | 4,174 | 3,764 | 9,810 | 2016
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| Bacillus subtilis |  | | 4,105 | 3,373 | 9,244 | 2007
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 | Brugia malayi |  |  | 11,349 | 9,685 | 28,770 | 2017
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| Brugia malayi |  | | 11,397 | 7,850 | 23,216 | 2008
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 | Burkholderia mallei |  |  | 4,795 | 4,312 | 12,037 | 2016
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| Burkholderia mallei |  | | 4,798 | 3,908 | 11,032 | 2007
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 | Caenorhabditis elegans |  |  | 27,954 | 24,010 | 73,668 | 2017
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| Caenorhabditis elegans |  | | 22,698 | 18,996 | 52,232 | 2007
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| Candida albicans |  |  | 9,067 | 7,571 | 20,599 | 2018
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 | Canis familiaris |  |  | 37,262 | 34,446 | 117,275 | 2017
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| Canis familiaris |  | | 30,264 | 22,614 | 65,595 | 2007
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| Chlamydia trachomatis |  |  | 887 | 804 | 2,320 | 2019
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 | Clostridium tetani |  |  | 2,687 | 2,450 | 6,869 | 2016
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| Clostridium tetani |  | | 2,412 | 2,158 | 5,864 | 2007
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| Coxsackievirus B3 (strain Woodruff) |  | | 15 | 13 | 24 | 2012
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 | Cryptosporidium hominis |  |  | 3,885 | 3,400 | 9,763 | 2016
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| Cryptosporidium hominis |  | | 3,886 | 1,614 | 3,287 | 2006
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 | Cryptosporidium parvum |  |  | 3,805 | 3,466 | 10,794 | 2016
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| Cryptosporidium parvum |  | | 3,806 | 1,918 | 3,969 | 2006
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| Dengue virus 2 16681-PDK53 |  | | 12 | 12 | 32 | 2012
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 | Drosophila melanogaster |  |  | 21,986 | 19,549 | 67,456 | 2017
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| Drosophila melanogaster |  | | 17,104 | 9,381 | 24,683 | 2006
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| Echinococcus granulosus |  |  | 10,222 | 8,768 | 28,535 | 2018
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| Echinococcus multilocularis |  |  | 10,318 | 8,998 | 29,499 | 2018
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| Edwardsiella tarda EIB202 |  | | 3,625 | 3,073 | 6,806 | 2014
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| Entamoeba histolytica |  |  | 8,006 | 7,287 | 23,003 | 2017
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 | Escherichia coli |  |  | 4,103 | 3,843 | 8,741 | 2016
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| Escherichia coli |  | | 4,206 | 3,150 | 5,994 | 2006
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| Escherichia coli K12 |  | | 4,069 | 3,952 | 11,132 | 2011
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| Giardia lamblia (assemblage A) |  |  | 9,295 | 6,026 | 18,341 | 2017
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| Giardia Lamblia P15 |  | | 5,054 | 5,004 | 21,917 | 2011
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| Helicobacter pylori 26695 |  | | 1,552 | 1,528 | 4,744 | 2010
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 | Homo sapiens |  |  | 180,967 | 153,964 | 475,451 | 2020
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| Homo sapiens |  |  | 170,418 | 140,104 | 396,574 | 2016
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| Homo sapiens |  | | 133,658 | 111,905 | 317,653 | 2013
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| Homo sapiens |  | | 63,075 | 58,631 | 219,440 | 2010
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| Homo sapiens |  | | 30,552 | 26,034 | 94,276 | 2008
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| Homo sapiens |  | | 32,010 | 21,270 | 51,076 | 2007
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| Human enterovirus 71 |  | | 25 | 23 | 49 | 2012
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| Human poliovirus 1 Mahoney |  | | 11 | 10 | 29 | 2012
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| Lactobacillus reuteri DSM 20016 |  | | 1,865 | 1,611 | 4,126 | 2012
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| Lactobacillus reuteri MM4-1A |  | | 2,023 | 1,683 | 4,268 | 2013
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| Lactobacillus reuteri SD2112 |  | | 2,201 | 1,784 | 4,529 | 2013
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| Leishmania braziliensis |  |  | 9,125 | 7,744 | 22,393 | 2017
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| Leishmania donovani |  |  | 7,736 | 6,889 | 21,193 | 2017
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| Leishmania infantum |  |  | 8,002 | 7,205 | 22,082 | 2017
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 | Leishmania major |  |  | 8,038 | 7,186 | 22,269 | 2016
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| Leishmania major |  | | 8,070 | 6,796 | 22,157 | 2011
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| Leishmania major |  | | 8,009 | 3,975 | 8,285 | 2006
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| Leishmania mexicana |  |  | 8,058 | 7,214 | 22,272 | 2017
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| Loa loa |  |  | 16,282 | 13,111 | 35,256 | 2019
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| Methanobrevibacter ruminantium M1 |  | | 2,209 | 1,745 | 3,986 | 2012
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 | Methanococcus jannaschii |  |  | 1,764 | 1,635 | 4,177 | 2016
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| Methanococcus jannaschii |  | | 1,785 | 1,480 | 1,707 | 2007
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| Methanopyrus kandleri |  | | 1,687 | 1,111 | 2,466 | 2007
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 | Mus musculus |  |  | 57,825 | 52,443 | 174,534 | 2017
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| Mus musculus |  | | 30,133 | 25,337 | 70,765 | 2008
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| Mycobacterium bovis BCG str. Pasteur 1173P2 |  | | 3,887 | 3,845 | 11,363 | 2012
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 | Mycobacterium leprae |  |  | 1,603 | 1,479 | 3,938 | 2018
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| Mycobacterium leprae |  | | 1,609 | 1,606 | 4,989 | 2011
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| Mycobacterium leprae |  | | 1,601 | 1,178 | 2,493 | 2006
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| Mycobacterium smegmatis str. MC2 155 |  | | 6,598 | 3,820 | 11,781 | 2012
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 | Mycobacterium tuberculosis |  |  | 3,965 | 3,724 | 10,158 | 2018
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| Mycobacterium tuberculosis |  | | 3,956 | 3,856 | 12,638 | 2011
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| Mycobacterium tuberculosis |  | | 3,972 | 3,373 | 10,617 | 2011
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| Mycobacterium tuberculosis |  | | 3,954 | 2,808 | 5,913 | 2006
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| Mycobacterium tuberculosis H37Rv |  | | 3,966 | 3,936 | 11,746 | 2012
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| Mycobacterium ulcerans |  |  | 4,200 | 3,774 | 10,832 | 2019
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| Mycoplasma genitalium |  |  | 515 | 483 | 1,408 | 2018
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 | Mycoplasma pneumoniae |  |  | 691 | 611 | 1,720 | 2017
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| Mycoplasma pneumoniae |  | | 687 | 426 | 857 | 2006
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| Nanoarchaeum equitans |  | | 536 | 447 | 496 | 2007
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| Neospora caninum |  |  | 7,112 | 6,581 | 23,593 | 2017
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| Onchocerca volvulus |  |  | 12,189 | 9,947 | 30,210 | 2019
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| Panicum virgatum |  |  | 71,059 | 64,493 | 212,837 | 2021
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 | Picrophilus torridus |  |  | 1,563 | 1,468 | 4,270 | 2017
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| Picrophilus torridus |  | | 1,535 | 1,260 | 2,902 | 2007
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| Plasmodium berghei ANKA |  |  | 5,026 | 4,777 | 15,372 | 2017
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 | Plasmodium falciparum |  |  | 8,547 | 8,064 | 28,260 | 2015
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| Plasmodium falciparum |  | | 5,342 | 2,599 | 5,053 | 2006
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| Plasmodium knowlesi |  |  | 5,173 | 4,740 | 14,222 | 2018
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 | Plasmodium vivax |  |  | 5,583 | 5,059 | 15,860 | 2015
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| Plasmodium vivax |  | | 5,334 | 2,359 | 4,670 | 2006
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| Plasmodium yoelii |  |  | 7,661 | 6,048 | 18,177 | 2018
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 | Pseudomonas aeruginosa |  |  | 5,560 | 5,277 | 14,763 | 2017
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| Pseudomonas aeruginosa |  | | 5,559 | 3,806 | 9,222 | 2006
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| Pyrobaculum aerophilum |  | | 2,600 | 1,566 | 3,497 | 2007
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 | Pyrococcus furiosus |  |  | 1,962 | 1,816 | 4,525 | 2017
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| Pyrococcus furiosus |  | | 2,113 | 1,524 | 3,373 | 2007
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 | Rickettsia prowazekii |  |  | 843 | 790 | 2,285 | 2017
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| Rickettsia prowazekii |  | | 835 | 754 | 2,135 | 2007
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 | Saccharomyces cerevisiae |  |  | 5,847 | 5,277 | 14,707 | 2017
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| Saccharomyces cerevisiae |  | | 6,600 | 3,440 | 9,463 | 2009
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| SARS-CoV-2 |  |  | 53 | 49 | 168 | 2020
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| Schistosoma japonicum |  |  | 12,715 | 11,036 | 31,058 | 2018
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 | Schistosoma mansoni |  |  | 12,501 | 10,711 | 32,119 | 2019
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| Schistosoma mansoni |  | | 12,720 | 8,616 | 26,193 | 2010
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| Staphylococcus aureus subsp. aureus MRSA252 |  |  | 2,635 | 1,184 | 3,161 | 2008
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| Streptococcus mutans |  | | 2,385 | 1,403 | 2,818 | 2012
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 | Streptococcus pyogenes |  |  | 1,687 | 1,575 | 4,081 | 2016
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| Streptococcus pyogenes |  | | 1,691 | 1,440 | 3,984 | 2007
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| Sulfolobus solfataricus |  | | 2,922 | 2,006 | 4,451 | 2007
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| Theileria parva |  |  | 4,065 | 3,486 | 10,158 | 2018
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 | Thermoplasma acidophilum |  |  | 1,506 | 1,393 | 4,059 | 2016
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| Thermoplasma acidophilum |  | | 1,480 | 1,220 | 2,801 | 2007
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 | Thermoplasma volcanium |  |  | 1,541 | 1,402 | 4,002 | 2017
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| Thermoplasma volcanium |  | | 1,497 | 1,204 | 2,806 | 2007
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 | Toxoplasma gondii |  |  | 8,311 | 7,376 | 25,634 | 2017
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| Toxoplasma gondii |  | | 7,787 | 1,530 | 3,064 | 2008
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 | Treponema pallidum |  |  | 969 | 883 | 2,593 | 2017
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| Treponema pallidum |  | | 1,030 | 1,027 | 2,764 | 2009
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 | Trypanosoma brucei |  |  | 9,682 | 7,778 | 22,766 | 2017
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| Trypanosoma brucei |  | | 8,965 | 3,900 | 8,054 | 2006
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| Trypanosoma brucei gambiense |  |  | 7,616 | 6,662 | 20,966 | 2018
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| Trypanosoma congolense |  |  | 9,895 | 8,092 | 22,593 | 2018
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 | Trypanosoma cruzi |  |  | 19,245 | 16,708 | 49,091 | 2017
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| Trypanosoma cruzi |  | | 19,245 | 7,390 | 14,858 | 2006
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| Wolbachia |  | | 805 | 621 | 1,873 | 2008
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| Xenopus |  | | 27,952 | 25,453 | 69,168 | 2007
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| Yersinia pestis |  | | 3,882 | 3,214 | 8,370 | 2007
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