FoXS Dock

Macromolecular Docking with SAXS Profile

 SAXS profile

The compute cluster will be down for routine maintenance from October 13 until October 14. Most jobs will be queued until the cluster is back up.

Type PDB codes of receptor and ligand molecules or upload files in PDB format sample input files
Receptor (PDB:chainId e.g. 2kai:A,B) or upload file:
Ligand (PDB:chainId e.g. 2kai:I) or upload file:
Complex SAXS profile
e-mail address (the results are sent to this address, optional)
Complex type Please specify receptor and ligand in the corresponding order!
Advanced Parameters
Job name
Weighted SAXS score Weighted SAXS scoring that accounts for monomers contribution
Distance constraints

If you use FoXSDock (version main.73fcb34), please cite:

Schneidman-Duhovny D, Hammel M, Sali A. Macromolecular docking restrained by a small angle X-ray scattering profile. J Struct Biol. 2010 [ Abstract ]
Schneidman-Duhovny D, Hammel M, Tainer JA, and Sali A. FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles. NAR 2016 [ FREE Full Text ]

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