ModBase

ModBase News

  • 4/22/2013: Change in file download: coordinate files downloaded through the ModBase interface are now named by Model ID, or (if several coordinate files are bundeled) as "modbase-models.pdb.xml"
  • 3/27/2013: ModPipe software update: the speed for individual sequence updates has decreased by 40% on average.
  • 2/28/2013: Check out our new website featuring the detailed results of a survey of the human transmembrane proteome: https://salilab.org/membrane.
  • 2/15/2013: Genome dataset update for Homo sapiens initiated. Completion is estimated for May 2013.
  • 12/18/2012: Weekly automatic modeling of new sequences in the SFLD database.
  • 2/27/2012: Genome dataset for Methanobrevibacter ruminantium M1 completed.
  • 2/25/2012: Nominate your genome! Email us at with suggestions for modelomes!
  • 2/15/2012: Genome dataset for Streptococcus mutans completed.
  • 1/13/2012: All files for selected full genome datasets are available at ftp://salilab.org/databases/modbase/projects/genomes.
  • 6/17/2011: Cavity information available through the Model Details page (see pull-down menu)
  • 6/17/2011: New, simplified Model Coverage Sketch
  • 9/15/2010: Check out the new UCSF Chimera - Modeller module for interactive modeling! (in the daily build)
  • 8/03/2010: Update trigger for individual sequences implemented
  • 8/02/2010: New Color-coding for quality criteria
  • 7/15/2010: ModBase facelift goes public
  • 7/14/2010: Genome dataset for Helicobacter pylori completed
  • 1/8/2010: Template Based modeling: New web-pages opened for template based statistics
  • 12/16/2009: ModWeb: New Frontend website with user registration and template based modeling