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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P15822
Original Database ID gi 141697
Organism Homo sapiens
Annotation recname: full=zinc finger protein
40;altname: full=human immunodeficiency
virus type i enhancer-binding
protein 1;short=hiv-ep1;altname:
full=major h ...
Sequence Length 2717

Dataset Information:

The newest dataset for this sequence was created on 2006-06-16. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region2070-2135
Protein Length2717
Template PDB Code1tf6A
Template Region90-157
Sequence Identity29%
E-Value5e-10
GA3410.49
Datasetsnp-human4
ModPipe VersionModPipe1.0
Model Date2006-06-16

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Cross-references

Show obsolete/secondary identifiers
Mutation Data
LS-SNP SNP Information available through LS-SNP
Template Structure
PDB1tf6co-crystal structure of xenopus tfiiia zinc finger domain bound to the 5s ribosomal rna gene internal control region ; PFAM: PF00096 ; SCOP: 45060 45061 45062 45063 45064 45065
DBALI1tf6A 
CATH3.30.160.60 Domain: 1tf6A03 Classic Zinc Finger (38%)
CATH3.30.160.60 Domain: 1tf6A04 Classic Zinc Finger (100%)
CATH3.30.160.60 Domain: 1tf6A05 Classic Zinc Finger (86%)
JenaImageLibrary1tf6 
Target Sequence
UniProtKBP15822RecName: Full=Zinc finger protein 40;AltName: Full=Human immunodeficiency virus type I enhancer-binding protein 1;Short=HIV-EP1;AltName: Full=Major histocompatibility complex-binding protein 1;Short=M
InterProP15822 
PFAMP15822 
ProdomP15822 
UniProtKBQ14122RecName: Full=Zinc finger protein 40;AltName: Full=Human immunodeficiency virus type I enhancer-binding protein 1;Short=HIV-EP1;AltName: Full=Major histocompatibility complex-binding protein 1;Short=M
InterProQ14122 
PFAMQ14122 
ProdomQ14122 
GenPept105869A34203 DNA-binding protein PRDII-BF1 - human
GenPept141697ZEP1_HUMAN ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY VIRUS TYPE I ENHANCER-BINDING PROTEIN 1) (HIV-EP1) (MAJOR HIST
GenPept38018unnamed protein product
GenPept4504389 human immunodeficiency virus type I enhancer-binding protein 1 [Homo sapiens]
GenPept507868488Sequence 21 from patent US 8426140
EMBLCAA35798.1 
UCSCGenomeBrowserP15822 
IPIIPI00013444.3