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ModBase: Database of Comparative Protein Structure Models

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TARGETMODEL DATATEMPLATE
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Sequence
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Database AnnotationOrganismProtein
Size
Modeled
Segment
SizeSeq
Id(%)
PDB
code
PDB
Segment
PDB Comment
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-410399131kcxA19-441x-ray structure of nysgrc
target t-45
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4273-406404172pajA15-454crystal structure of
an amidohydrolase from
an environmental sample
of sargasso sea
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4272-427426161ejxC1063-1475crystal structure of
wild-type klebsiella
aerogenes urease at
100k
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-416403141onxA12-388crystal structure of
isoaspartyl dipeptidase
from escherichia coli
complexed with aspartate
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-411411131onwA4-388crystal structure of
isoaspartyl dipeptidase
from e. coli
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-410397131rk6A12-463the enzyme in complex
with 50mm cdcl2
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-408395183h4uA33-436
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43060-363304131bf6A7-289phosphotriesterase homology
protein from escherichia
coli
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43024-367344141krmA21-332crystal structure of
bovine adenosine deaminase
complexed with 6-hydroxyl-1,6-dihydropurine
riboside
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398141onxA12-383crystal structure of
isoaspartyl dipeptidase
from escherichia coli
complexed with aspartate
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398282qt3A9-396crystal structure of
n-isopropylammelide
isopropylaminohydrolase
atzc from pseudomonas
sp. strain adp complexed
with zn
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-408400172r8cA6-412crystal structure of
uncharacterized protein
eaj56179
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-4264191001r9yA8-426bacterial cytosine deaminase
d314a mutant.
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43218-414397141o12A10-364crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43230-380351131krmA25-345crystal structure of
bovine adenosine deaminase
complexed with 6-hydroxyl-1,6-dihydropurine
riboside
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-409398161gkrA6-434l-hydantoinase (dihydropyrimidinase)
from arthrobacter aurescens
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-409408141po9A2-383crytsal structure of
isoaspartyl dipeptidase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-416408141e9yB70-467crystal structure of
helicobacter pylori
urease in complex with
acetohydroxamic acid
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43029-415387111e9zB105-463crystal structure of
helicobacter pylori
urease
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-4324191001k70A8-426the structure of escherichia
coli cytosine deaminase
bound to 4-hydroxy-3,4-dihydro-1h-pyrimidin-2-one
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43228-385358131o12A9-344crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4301-428428152oodA10-455crystal structure of
guanine deaminase from
bradyrhizobium japonicum
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-383370132imrA39-415crystal structure of
hypothetical protein
dr_0824 from deinococcus
radiodurans
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398131onwA12-383crystal structure of
isoaspartyl dipeptidase
from e. coli
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42723-364342131a4mA33-332ada structure complexed
with purine riboside
at ph 7.0
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398121o12A3-361crystal structure of
n-acetylglucosamine-6-phosphate
deacetylase (tm0814)
from thermotoga maritima
at 2.5 a resolution
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43228-421394133ubpC87-468diamidophosphate inhibited
bacillus pasteurii urease
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4264-379376143etkA126-495
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4272-427426142vm8A14-471human crmp-2 crystallised
in the presence of mg
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4279-407399131kcxA19-441x-ray structure of nysgrc
target t-45
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42723-416394133ubpC87-468diamidophosphate inhibited
bacillus pasteurii urease
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-406406141po9A4-383crytsal structure of
isoaspartyl dipeptidase
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4308-4304231001ra0A4-426bacterial cytosine deaminase
d314g mutant bound to
5-fluoro-4-(s)-hydroxy-3,4-dihydropyrimidine.
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-410397134ubpC71-473structure of bacillus
pasteurii urease inhibited
with acetohydroxamic
acid at 1.55 a resolution
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4302-415414131a5nC60-461k217a variant of klebsiella
aerogenes urease, chemically
rescued by formate and
nickel
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42748-364317111ndwA32-335crystal structure of
adenosine deaminase
complexed with fr221647
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-405398151gkrA6-434l-hydantoinase (dihydropyrimidinase)
from arthrobacter aurescens
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397171p1mA3-378structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-4304191001r9yA8-426bacterial cytosine deaminase
d314a mutant.
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43012-408397151p1mA3-378structure of the hypothetical
protein tm0936 from
thermotoga maritima
at 1.5a bound to ni
and methionine
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4275-415411131k1dA1-447crystal structure of
d-hydantoinase
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-415408141e9zB70-475crystal structure of
helicobacter pylori
urease
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli43060-345286101p6bA50-329x-ray structure of phosphotriesterase,
triple mutant h254g/h257w/l303t
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-378371131nfgA5-392structure of d-hydantoinase
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-411398141po9A12-383crytsal structure of
isoaspartyl dipeptidase
55669648a chain a, bacterial cytosine
deaminase d314g mutant bound
to 5-fluoro-4-(s)- hy droxy-3,4-dihydropyrimidine
Escherichia coli4306-409404172pajA15-454crystal structure of
an amidohydrolase from
an environmental sample
of sargasso sea
18655481a chain a, the structure
of escherichia coli cytosine
deaminase
Escherichia coli4268-411404141fwhC70-461klebsiella aerogenes
urease, c319y variant
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
42723-384362162i9uA34-392crystal structure of
guanine deaminase from
c. acetobutylicum with
bound guanine in the
active site
D8A054subname: full=cytosine deaminase
{eco:0000313|embl:efk23471.1};ec=3.5.4.1
{eco:0 000313|embl:efk23471.1};
Escherichia coli,
Escherichia coli H386,
etc.
43214-410397141k1dA5-437crystal structure of
d-hydantoinase
P25524.3coda_ecoli recname: full=cytosine
deaminase; altname: full=cytosine
aminohydrola se
Escherichia coli,
Shigella dysenteriae,
etc.
4271-412412141fwhC62-461klebsiella aerogenes
urease, c319y variant