FoXS Dock

Macromolecular Docking with SAXS Profile

SAXS profile

The compute cluster will be down for routine maintenance from October 13 until October 14. Most jobs will be queued until the cluster is back up.

Links

  • IMP - Integrative Modeling Platform for comprehensive structural characterization of biomolecules. FoXS code is found in applications/saxs.
  • PatchDock - an automatic web server for molecular docking.
  • FireDock - an efficient method for refinement and re-scoring of rigid-body protein-protein docking solutions.
  • UCSF Chimera - FoXS is available through Chimera interactive visualization program. See this tutorial on how to use FoXS from Chimera.
  • MES - minimal ensemble search
  • Bioisis - open access SAXS database.
  • EMBL SAXS software

If you use FoXSDock (version main.73fcb34), please cite:

Schneidman-Duhovny D, Hammel M, Sali A. Macromolecular docking restrained by a small angle X-ray scattering profile. J Struct Biol. 2010 [ Abstract ]
Schneidman-Duhovny D, Hammel M, Tainer JA, and Sali A. FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles. NAR 2016 [ FREE Full Text ]

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